Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01359 ATGGGTGGTTTTGACGTGGAAGCACTTAGTCTCATGGAAGGATCATCAGGAGTTAGGAAAGGTGCATGGAGTCAACTTGAAGATAAACTTCTCAGAGATTGCGTGCATCTTTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAATAGATGCAGGAAGAGCTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGTGATTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAACTTTTGGGAAACAGGTGGTCTCTGATTGCAGGAAGACTTCCTGGAAGAACTTCAAACGATGTGAAGAATTTCTGGAACACCAACCTACGACGCAAAGTACTCTCTCACAACAAGGAAAATGTAAAAGAATCCGAAACAACTAGGAAAACCCACCAAGTGATAAAGCCTGTGCCTCGGGTTTTGCCAAAAGCATCGTCTTTGCTGCAAGGAAAATCCATGAGTAGTTTCAAAGTTGGTGTTGGTGAAGCAGTTTCATCGTCAGGGTCTGAGAATTGGTGGGAAACTTTGTTAGATGAGAAGGAAGAAAATATTAACAACAGCACATGCTTCCCTGGGGGGAAAGTTGGAGCGATTGAGCTGGGACGAAGAACTTAG 642 0.4283 MGGFDVEALSLMEGSSGVRKGAWSQLEDKLLRDCVHLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNFWNTNLRRKVLSHNKENVKESETTRKTHQVIKPVPRVLPKASSLLQGKSMSSFKVGVGEAVSSSGSENWWETLLDEKEENINNSTCFPGGKVGAIELGRRT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01359 213 SMART sant 72 120 IPR001005 -
Spst1g01359 213 SMART sant 19 69 IPR001005 -
Spst1g01359 213 Gene3D - 75 145 - -
Spst1g01359 213 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Spst1g01359 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Spst1g01359 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Spst1g01359 213 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 15 140 - -
Spst1g01359 213 FunFam Myb transcription factor 20 72 - -
Spst1g01359 213 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Spst1g01359 213 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Spst1g01359 213 CDD SANT 22 67 IPR001005 -
Spst1g01359 213 CDD SANT 76 118 IPR001005 -
Spst1g01359 213 FunFam Transcription factor MYB113 75 147 - -
Spst1g01359 213 Gene3D - 20 72 - -
Spst1g01359 213 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Spst1g01359 213 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01359 Spst-Chr1 17046160 17047387 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01359 13 155 MYB Transcription Factor Family AT1G66370 59.333 7.18e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g01359 Myb_DNA-binding 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01359 - K16166 pvu:PHAVU_008G038600g 308.145