Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01356 ATGGGACGATCACCATGCTGTGACAAGGTGGGTCTAAAGAAAGGACCATGGACGCCAGAAGAAGATCAGAAGCTCTTGGCATATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGACCTGATATTAAGAGGGGAAAGTTCAGTGTGCAAGAAGAGCAAACCATCATCCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCCACACATTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGAGTCACAAGCCCAAGAACGATGCCCTTCTCTCCACTGAGGGTCACTCCAAGAGTGCAGCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTCAGAGAATCAAAACTACGTAGCTCACGCTCATCATCAGCAGCAGCAGCATTGCAGCACCCTCTAGTTGGAACTTCTGCATTATCGTCATCGTCTTCAGCTCCAGTATTACCCTCCTCAACACGTTCTCTTGATCATGCTTGGAACAATGGTAGTAGTACTAGTACGGTTGCAACTAGGGTCAGTGACCTTGAGTCCCCCACTTCTACCTTATCCGAGAACAATGCCCCACCAATTATGACAAATGTGATTGAGCTTGTTGGTTCATCGGAGAGAGGAATAGTAAAGGAAGAAGGAGAGCGAGAGTGGAACAAAGGTTTTCATGAAAGCTCCATCCATATGGGAGAATACAAAGATGGCTTGGAGAATTCAATGCCTTTCACGTCTAGTCTGCATGAGTTATCAATGACCATGGCAACCACGTGGGGCACTACTGCTACCAGTGCACATGCGCATGCACATGTTGCTGAGGCGGGATTCACCAACCTTTTGCTGAATTCTAACACCGGTGACAGGAGTTTGTCGCGGGAGGGTGGTGGAGAGTCTAATAACAGTCATGGTAATGTTACTAATGGGGATAATGGTAATGGTAATGGTAACAGTAACGAGTTATACGAAGAAAGCAAGATCTATTGGAACAACATTCTTAATTTGATGAACTATTCTTCCCCTTCGGATTCACCGATGTTCTGA 1182 0.4636 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVSHKPKNDALLSTEGHSKSAANLSHMAQWESARLEAEARLVRESKLRSSRSSSAAAALQHPLVGTSALSSSSSAPVLPSSTRSLDHAWNNGSSTSTVATRVSDLESPTSTLSENNAPPIMTNVIELVGSSERGIVKEEGEREWNKGFHESSIHMGEYKDGLENSMPFTSSLHELSMTMATTWGTTATSAHAHAHVAEAGFTNLLLNSNTGDRSLSREGGGESNNSHGNVTNGDNGNGNGNSNELYEESKIYWNNILNLMNYSSPSDSPMF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01356 393 SMART sant 13 63 IPR001005 -
Spst1g01356 393 SMART sant 66 114 IPR001005 -
Spst1g01356 393 CDD SANT 69 112 IPR001005 -
Spst1g01356 393 FunFam MYB-related transcription factor 13 66 - -
Spst1g01356 393 CDD SANT 16 61 IPR001005 -
Spst1g01356 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Spst1g01356 393 MobiDBLite consensus disorder prediction 121 140 - -
Spst1g01356 393 FunFam MYB transcription factor 69 116 - -
Spst1g01356 393 Gene3D - 13 66 - -
Spst1g01356 393 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst1g01356 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst1g01356 393 Gene3D - 69 141 - -
Spst1g01356 393 MobiDBLite consensus disorder prediction 208 239 - -
Spst1g01356 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst1g01356 393 MobiDBLite consensus disorder prediction 332 365 - -
Spst1g01356 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst1g01356 393 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst1g01356 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst1g01356 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01356 Spst-Chr1 17011685 17014189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01356 1 169 MYB Transcription Factor Family AT5G15310 89.349 4.08e-110 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g01356 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01356 K09422 - gmx:100794047 583.563