Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01355 ATGGTGCTTCAAAGAGTTAGGTTTATAAACAAAGGAGGTCATCAATTTGAAGAACATAGCAACCTCAACATTTACGTTCAGGCTAATTTTGTGACGGCTGATTCAAAGGTTGTTGACAACTGTTTCTCTGCCGTGGCCATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGAATTTGCCTGGATTGGCTAAAATGGGTGAAACTGAGTGGTATTATTTCTGTGTGAGGGACAAAAAATACCCAACTGGTTTAAGGACTAACAGGGCTACTGATGCTGGTTATTGGAAAGCCACAGGCAAAGACAAGGAGATAATAACCGAAAATGCTCTCATTGGGATGAAGAAAACTTTAGTTTTCTACATGGGAAGAGCTCCAAGAGGTGAAAAGACAAACTGGATCATGCATGAATATAGGTTGGAAGGGAAACATAATCAACACAAATCTGGAAAGAGTGAGTGGGTGCTCTGCAGAGTCTTTGAGAAGAAGAGTCCTTGTAGAAAGAAAATGCCTGTTCCAGAATGTGGGAGGTTCAATGCCTTCGAAAAGGAATCTTCACCACCTTCTTCTCTATTGCCTCCATTGATGGATTCTTCTCCATACAACAGTGAAACAAGAACCACTGCTGGTGAGTTGTCTCAGGTGACCAGCTGCGGTCCAAATCAAACTGTGGATCAGAACACACATGATGACATTGTTGATAGTTTGGAAACTCCTGTTTTGGACTTTTCATCTTCTGCAACACCTGTTGATGCTCCCCCTTCTGGCAAAGCAACCCTTTCAGTCGCAAGCCAATCAACACATATTGCACACCAAATTGGGAATTCACAGCACCCAGATAATTGTTATGTGCTTCAAGAACAATCCATAAGGATGCTGATGGAAAATCATGGATCAAGCGCAAGGCAAATTCAGAAAGCAGAGTTTCCTGAGGGGAGAGACTTTGATGCTGATATCTCATCTGTGATATACAGCAGTGACATGATGCAGAGAATGTTTGGGAATCAAGAACATTCATCAGCTTCTGCAGGACATGTGGGCACTGATTGCCTATGGAATTACTGA 1065 0.4244 MVLQRVRFINKGGHQFEEHSNLNIYVQANFVTADSKVVDNCFSAVAIGEVDLNKCEPWNLPGLAKMGETEWYYFCVRDKKYPTGLRTNRATDAGYWKATGKDKEIITENALIGMKKTLVFYMGRAPRGEKTNWIMHEYRLEGKHNQHKSGKSEWVLCRVFEKKSPCRKKMPVPECGRFNAFEKESSPPSSLLPPLMDSSPYNSETRTTAGELSQVTSCGPNQTVDQNTHDDIVDSLETPVLDFSSSATPVDAPPSGKATLSVASQSTHIAHQIGNSQHPDNCYVLQEQSIRMLMENHGSSARQIQKAEFPEGRDFDADISSVIYSSDMMQRMFGNQEHSSASAGHVGTDCLWNY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01355 354 MobiDBLite consensus disorder prediction 183 227 - -
Spst1g01355 354 FunFam NAC domain-containing protein 100-like 29 166 - -
Spst1g01355 354 ProSiteProfiles NAC domain profile. 9 162 IPR003441 GO:0003677|GO:0006355
Spst1g01355 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 261 - -
Spst1g01355 354 SUPERFAMILY NAC domain 36 162 IPR036093 GO:0003677|GO:0006355
Spst1g01355 354 Gene3D NAC domain 31 166 IPR036093 GO:0003677|GO:0006355
Spst1g01355 354 MobiDBLite consensus disorder prediction 181 227 - -
Spst1g01355 354 Pfam No apical meristem (NAM) protein 39 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01355 Spst-Chr1 16993717 16995850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01355 36 354 NAC Transcription Factor Family AT5G07680 46.037 1.87e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g01355 NAM 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01355 - - gmx:100790888 484.182