Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01351 ATGTCAACCTCGAGCCAGCACCAGTTCCGATACACTCAAACCCCATCGAAGGTGCTGCACCTTCGCAACCTCCCCTGGGAATGCTCCGAGGAGGAGCTCAAAGAGCTCTGCAAACCCTTCGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTTGAATTCGTAGATCTAAATCAAGCCATTTCGATGGTTTCATATTATGCTTCATCTTCTGAACCTGCTATGGTTCGTGGTAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGTCCCGGAGATATTCCTGGAAATGTCCTGCTGGTAACTATTGAAGGTGTGGAAGCTGGGGATGTTAGCATTGACGTTATCCATTTGGTGTTTTCTGCCTTTGGCTTTGTTCACAAAATTGCAACATTTGAAAAGACTGCAGGTTTCCAGGCTCTGATTCAGTTCACTGATGCTGAAACTGCTTCTTCTGCTAGAGATGCACTGGATGGAAGAAGCATACCAAGGCAAGCAGTGTTTTTATACCTTCTTCCAGCCCATGTTGGTTCTTGTAATTTACGTATTTCATACTCAGCACATAAAGATCTGAATATCAAGTTTCAATCAAATCGCAGCAGGGACTACACAAATCCTATGCTTCCCGTTAACTATACTGCTATTGAGGGGACAGTACAGACTGCTGTAGGCCCTGATGGGAAGAGGAAAGAACCTGAGAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCCTCCACACTGTCTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATATCATAACTGCAGCAGCCGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTGCCAGATCCTAGTCTTCTTGCAGCACAAGGTCCTGCAACAGCTTGGCAAAATCCTCAGGCTACTTACCCTGGTAGTGCCCCTGCTTATCACACTCAAGTTCCGGGTGGACAAGTGCCATCATGGGACCCATCCATGCAGGCTGTTAGACCCAGTTACATATCCGCACCTGGTACTTTTCCTGTTCAAACTGGTGCCGTTCCTCGAATGCCATCCTATGCGCCAGCAGCAGCTATGCCCGCAGCTTCCTCACCTCTTGCACAAAGCAGCCCCATTGGTCATAATGCAAATCCAATGGGAATTCCTCAACCTGGGGTTCCACCCAATGTAAATTTACAGCCCAGTGGTGGTCCACTTGGGTCCTCACCTCTCATGCAGACCAGCCAAGCCGCTCAGGCAGTGGTTCAGCCAGGGGCTCAGCCAAATGCTAGACCTGGGGGTGCTTCACCACCAGGTCAACATTATTATGCTTAG 1503 0.4644 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELKELCKPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRQAVFLYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGTVQTAVGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQGPATAWQNPQATYPGSAPAYHTQVPGGQVPSWDPSMQAVRPSYISAPGTFPVQTGAVPRMPSYAPAAAMPAASSPLAQSSPIGHNANPMGIPQPGVPPNVNLQPSGGPLGSSPLMQTSQAAQAVVQPGAQPNARPGGASPPGQHYYA 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01351 500 SUPERFAMILY RNA-binding domain, RBD 107 172 IPR035979 GO:0003676
Spst1g01351 500 CDD RRM2_PTBPH1_PTBPH2 109 208 IPR034793 -
Spst1g01351 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 327 IPR000504 GO:0003723
Spst1g01351 500 FunFam Polypyrimidine tract-binding protein homolog 2 4 110 - -
Spst1g01351 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Spst1g01351 500 MobiDBLite consensus disorder prediction 427 500 - -
Spst1g01351 500 Gene3D - 2 108 IPR012677 -
Spst1g01351 500 Pfam RRM-like domain 247 325 IPR021790 -
Spst1g01351 500 Gene3D - 109 225 IPR012677 -
Spst1g01351 500 Gene3D - 246 349 IPR012677 -
Spst1g01351 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Spst1g01351 500 MobiDBLite consensus disorder prediction 457 479 - -
Spst1g01351 500 CDD RRM3_PTBPH1_PTBPH2 247 343 IPR034794 -
Spst1g01351 500 FunFam Polypyrimidine tract-binding protein-like 2 246 351 - -
Spst1g01351 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Spst1g01351 500 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 4 264 - -
Spst1g01351 500 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
Spst1g01351 500 SMART rrm1_1 18 91 IPR000504 GO:0003723
Spst1g01351 500 SMART rrm1_1 251 321 IPR000504 GO:0003723
Spst1g01351 500 SMART rrm1_1 113 183 IPR000504 GO:0003723
Spst1g01351 500 SUPERFAMILY RNA-binding domain, RBD 253 347 IPR035979 GO:0003676
Spst1g01351 500 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01351 Spst-Chr1 16946981 16953627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01351 10 182 Eukaryotic Initiation Factors Gene Family AT3G16380 24.044 2.91e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01351 K14948 - gmx:100792308 868.996