Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01349 ATGCAGAGAGGGACTACTCCACAGTGCGAAACTCTCTCTCCGGTGGTAACACGACGTGTCTCCGCAATAAAGCAAAACTGGCCCCTTTGTTCTTCAGATTCTTCACTAAATTGTGATGACATGGATAGTAGCGTAAAAAAAAGGGGCTTTGGAAATAAGGCACTTTGCTATAGTATGTGGATAAATTACAAGAATATCTTAAATTCAAAGCCTTTGTGGACTCCAATTCAATTTGAATTGTATGAAACCGCTTTCACATTCCCGTTAAAAAAGCATAGTTTTCCACAAACCAGATTCCCTAGATCCCTTGCTCTCTCACAGTTTTCAGCAATTGCATGGTCCCAACTGCTCAAATGTGTCTATATGTCTGTCAGGTTGATGTTGACTCTCCTCTATTTATTCCTTTCCAATTTCCCCTTTCATTTCCACAAACAACTTCTTTCAAGGGAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGGTGTCACATGTCAAGGGTTATGGGGGTTGGATCAATGCACATGCCACTTTCTATGGAGGAGGTGATGCTTCTGGAACAATGGGTGGGGCTTGTGGTTATGGAAATCTCTATAGCCAGGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGTTTGAGCTGTGGTGCATGCTTTGAAATTAAATGTGTGAATGACCCACAATGGTGCCTTCCTGGCTCTATCGTAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCCAACACCACTTTGATCTGTCTCAACCTGTTTTTCAGCACATTGCTCAATATAAGGCTGGAATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATCTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGTACATCAAAGGGTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAGAACTGGCAGAGCAACTCCTACTTGAATGGCCAAAGTCTCTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCTCCAGCTGGTTGGTCCTTTGGGCAGACCTATACTGGAAGGCAGTTCAACTACTAA 1170 0.4444 MQRGTTPQCETLSPVVTRRVSAIKQNWPLCSSDSSLNCDDMDSSVKKRGFGNKALCYSMWINYKNILNSKPLWTPIQFELYETAFTFPLKKHSFPQTRFPRSLALSQFSAIAWSQLLKCVYMSVRLMLTLLYLFLSNFPFHFHKQLLSREMALLGFLLGLFYMVSHVKGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVYIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01349 389 SMART dpbb_1 208 285 IPR007112 -
Spst1g01349 389 SUPERFAMILY Barwin-like endoglucanases 172 313 IPR036908 -
Spst1g01349 389 CDD DPBB_EXPA_N 172 280 - -
Spst1g01349 389 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 305 384 IPR007117 -
Spst1g01349 389 SUPERFAMILY PHL pollen allergen 292 384 IPR036749 -
Spst1g01349 389 PRINTS Expansin/Lol pI family signature 172 187 IPR007118 GO:0005576
Spst1g01349 389 PRINTS Expansin/Lol pI family signature 278 294 IPR007118 GO:0005576
Spst1g01349 389 PRINTS Expansin/Lol pI family signature 370 384 IPR007118 GO:0005576
Spst1g01349 389 PRINTS Expansin/Lol pI family signature 190 208 IPR007118 GO:0005576
Spst1g01349 389 PRINTS Expansin/Lol pI family signature 332 346 IPR007118 GO:0005576
Spst1g01349 389 PRINTS Expansin/Lol pI family signature 212 230 IPR007118 GO:0005576
Spst1g01349 389 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 191 295 IPR007112 -
Spst1g01349 389 FunFam Expansin 163 291 - -
Spst1g01349 389 Gene3D - 162 291 IPR036908 -
Spst1g01349 389 PRINTS Expansin signature 253 270 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 370 386 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 306 327 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 294 306 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 242 252 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 270 283 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 341 362 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 203 217 IPR002963 GO:0009664
Spst1g01349 389 PRINTS Expansin signature 230 241 IPR002963 GO:0009664
Spst1g01349 389 Gene3D - 295 387 IPR036749 -
Spst1g01349 389 Pfam Expansin C-terminal domain 296 373 IPR007117 -
Spst1g01349 389 Pfam Lytic transglycolase 208 285 IPR009009 -
Spst1g01349 389 FunFam Expansin 295 387 - -
Spst1g01349 389 PANTHER EXPANSIN-A15 155 387 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01349 Spst-Chr1 16937679 16942487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01349 150 387 Expansin Gene Family AT2G03090 78.226 3.41e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01349 K20628 - gmx:100791784 512.686