Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01326 GGGGAAATATCTCATCAAAATGATATTGAAACCAAGGAGACTCACTTTGTATGGTTAAAGTCTGCATCAAAAGGGTTCAGCCAAGAGAAAAAACAGGTACTAGTCAAGTTCACGCCTCGGCGTGGACCCACGCTCCCATTTTACGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTGCATACACATTGCGAGAGCTTTTCCAGCCATCAAAGGAAATTGGGGCAACATCACCTGCTGGATCACATGTTCAAGCACTAATCATGGAAATGGTGACAACTTTCACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACACAAACGCTACAGGACAGCTATCAGGAGTAGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTTGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAGTTTCATCCTACAAGGGACTTTGGGTATATTTTGTTGGACCAATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACGGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTTTCATTCAAGGTACGACAAAGCATCGTTGGAACCGAACAAGTTGATAAAAACGGCCACCGATGCTTGGTTTGA 645 0.4574 GEISHQNDIETKETHFVWLKSASKGFSQEKKQVLVKFTPRRGPTLPFYVAAQLTGAISAAYTLRELFQPSKEIGATSPAGSHVQALIMEMVTTFTMVFISMAVATDTNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIAVSSYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKVRQSIVGTEQVDKNGHRCLV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01326 214 PANTHER AQUAPORIN NIP2-1 45 181 IPR034294 -
Spst1g01326 214 Pfam Major intrinsic protein 45 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01326 214 PRINTS Major intrinsic protein family signature 119 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01326 214 PRINTS Major intrinsic protein family signature 156 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01326 214 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01326 214 PRINTS Major intrinsic protein family signature 88 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g01326 214 Gene3D Glycerol uptake facilitator protein. 33 182 IPR023271 -
Spst1g01326 214 SUPERFAMILY Aquaporin-like 44 182 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01326 Spst-Chr1 16276246 16278025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01326 40 182 Major Intrinsic Protein MIP AT5G37820 47.945 1.64e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01326 K09874 - gmx:100795261 283.878