Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01323 ATGGACATAACCCCAACAACAACGATCAACACCGCCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCCACAAAAGCCTTGCCTTTCTCCAACGGGGTCCTCAAGCGTCACCACCATCACCACCACCACCACCACCCCATGTCCGCCGCCATCACATACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGTCACGCCTTAGATGGCTGCGGCGAGTTCATGCCGTCCCCCACCGCCACCTCCGCCGATCCCAGCTCCATAAAATGCGCGGCCTGCGGATGCCACCGCAACTTCCACCGCCGTGAGCCGGAGGAGCCACCCATCGCCTCCACCACGCATGTGATCGAGTACCAGCCTCACCACCGCCACCATCCTCCGCCACCGTTCCAGGCGGCAGCGGCCAATCGCAGCCCGAATTCCGCTTCCCCGCCGCCGATCTCCTCGTCGTACTACCCGTCCGCGCCTCACATGCTGATCGCCCTCTCGGCCGGGCTCGCCGCGCCGCCGGAGAGTACCGCCGCACCCTCCAACGCGCTCACCAGAAAGCGTTTCAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCCGAGAAAGTAGGATGGAAGATGCAGAAGAGGGACGAAGATTTGATTCACGAGTTTTGCAACGAGATTGGCGTTGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATCATAATGTTAATATTACTAGCAATGATAATATTACTAATAATATTAATGATAATGATGCAAATGGGGGTGACAAGGGTTTCGAAGACCCTAGCTGCGACATCGATGGTGGTGCTGAAGATCGCGGTGAGGATCCGAGTCGTAATCACTTCGGTGGGGTGAACGTTGGTGCTAACGGGTCTTCTTCTACTTCTTGA 972 0.5566 MDITPTTTINTATPSATTKSPEHDTETPTRINTPTATKALPFSNGVLKRHHHHHHHHHPMSAAITYKECLKNHAANLGGHALDGCGEFMPSPTATSADPSSIKCAACGCHRNFHRREPEEPPIASTTHVIEYQPHHRHHPPPPFQAAAANRSPNSASPPPISSSYYPSAPHMLIALSAGLAAPPESTAAPSNALTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEIGVDRSVLKVWMHNNKNTLAKKDHNVNITSNDNITNNINDNDANGGDKGFEDPSCDIDGGAEDRGEDPSRNHFGGVNVGANGSSSTS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01323 323 MobiDBLite consensus disorder prediction 1 37 - -
Spst1g01323 323 MobiDBLite consensus disorder prediction 273 323 - -
Spst1g01323 323 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Spst1g01323 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Spst1g01323 323 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Spst1g01323 323 MobiDBLite consensus disorder prediction 148 162 - -
Spst1g01323 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 255 - -
Spst1g01323 323 SUPERFAMILY Homeodomain-like 187 257 IPR009057 -
Spst1g01323 323 MobiDBLite consensus disorder prediction 133 163 - -
Spst1g01323 323 FunFam Zinc-finger homeodomain protein 2 184 257 - -
Spst1g01323 323 MobiDBLite consensus disorder prediction 281 306 - -
Spst1g01323 323 Gene3D - 183 258 - -
Spst1g01323 323 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01323 Spst-Chr1 16229873 16230844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01323 1 252 ZF-HD Transcription Factor Family AT5G15210 52.569 1.24e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst1g01323 ZF-HD_dimer 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01323 - - gmx:100789447 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01323 1 16229873 16230844 Spst1g01323 1 16229873 16230844 ECH
Spst4g00195 4 2178530 2179546 Spst1g01323 1 16229873 16230844 PCT