Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01322 ATGCTTAGTGCTGTTCCACAGGGAGACGCTCAGGGACTTCAGGGTACCTCTGTAAGGTCCCACACTCAGCGTAGCCTAGGGTTTGAAGGTACTGAATTTGAAGGGCAACACACCATGATGAGGAGAGTGACTTTGAGAACAGAGCCTCCTCGGAGATGCCCAAACAACAATACGGTGACGATTGTGAAGAATGTTCAAAATGGAGAGTGCCAAAGGAATCACGCAATTAAGATGGGAGGATTTGCTCAGGATGGTTGCATGGAGTTCCTCCCAGGTGGAGCAGAAGGAACTGCCAAAGCTCTGATTTGTGGTGCATGTGGTTGCCACAAGAACTACCATAGGAGGGAGATCCATATACATGTTACTTGTCAATGTGCTTCTCATCCTAATAATGGACAAGCCTGA 405 0.479 MLSAVPQGDAQGLQGTSVRSHTQRSLGFEGTEFEGQHTMMRRVTLRTEPPRRCPNNNTVTIVKNVQNGECQRNHAIKMGGFAQDGCMEFLPGGAEGTAKALICGACGCHKNYHRREIHIHVTCQCASHPNNGQA 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01322 134 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Spst1g01322 134 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 120 - -
Spst1g01322 134 MobiDBLite consensus disorder prediction 9 23 - -
Spst1g01322 134 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g01322 134 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Spst1g01322 134 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01322 Spst-Chr1 16215494 16218370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01322 62 132 Zinc finger-homeobox gene family AT3G28917 55.556 1.38e-24 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst1g01322 ZF-HD_dimer 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01322 - - vra:106758454 171.785