Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01317 ATGGTGCAGAGGCTCACATATCGCAAGCGCCACAGCTATGCCACCAAATCGAACCAGCACCGGGTTGTGAAAACCCCTGGTGGTAAGTTGGTGTACCAGAGCACTAAGAAGAGGGCAAGTGGACCCAAGTGCCCTGTCACTGGGAAGAAGATCCAAGGGATCCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGTCTAGGAATCGGCGAACAGTAAACCGGGCCTATGGAGGTGTTTTATCTGGAGGAGCTGTTAGAGAAAGGATTATTCGTGCTTTCCTTGTTGAAGAGCAGAAAATTGTGAAAAAGGTATTGAAGATTCAGAAGGCAAAAGAAAAGCAGGCATCGAAGAGTTAA 363 0.4766 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01317 120 Gene3D - 39 120 - -
Spst1g01317 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Spst1g01317 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Spst1g01317 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Spst1g01317 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Spst1g01317 120 Gene3D - 1 37 - -
Spst1g01317 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Spst1g01317 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Spst1g01317 120 MobiDBLite consensus disorder prediction 32 51 - -
Spst1g01317 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01317 Spst-Chr1 16160233 16162146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01317 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 90.756 7.55e-76 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01317 K02915 - csin:114270759 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01317 1 16160233 16162146 Spst1g01317 1 16160233 16162146 ECH