Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01311 ATGTACCTGCTTAAAGTTGAGCACTTCAAGTTTCTTGCTCACGAAGAAGATCACGATCACCTCCCTTCAACCTCTCTCAACGCCTTCCCCTCTCTGCCACCCCAACACTTTCAAGGGGTTGCATCACCAGTCAGGTTGAAGCGATCCATGTCGTTTTCAGGAATTGAGAACAAGTGCGATGGGTTGAATGGAGATGATGAGTTATCCGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAAGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCATCCAAGACAAATTGCCATATGGTTTCAGAATAGAAGAGCCAGATGGAAAACCAAGCACTTGGAGAAGGAATACGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGAGAATGATGTTCTTAAGATTCAGAATCAGAAACTACTCGCAGAGTTACAAGCAGTAAAAAGTAGGGGTTGGTGTGAAGCTGGAATAGTCAGCCTCCTGAAGAAAGAAACTGAGGGTTCACAGAGCAATGGAAGTGAGAACAGCTCAGACATTAATTTGGGTCTCTCAAGATCACCGACTTTGAACAATCCTATGTCTTGTCAACCACCCTTTTCCTTAAATCCCACCAGCATAACCCAGATCCTTCACTATTCGTCAAAACCAGATCTTCAAGATGATGGTTTTTGCAACATGTTTCAAAACAGTGATGCACAAAAAAACTTTTGGCCCTGGCCTGGTCAACAGAACCACCATTTGCATTGA 819 0.4444 MYLLKVEHFKFLAHEEDHDHLPSTSLNAFPSLPPQHFQGVASPVRLKRSMSFSGIENKCDGLNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLHPRQIAIWFQNRRARWKTKHLEKEYEALKKQFEAAKAENDVLKIQNQKLLAELQAVKSRGWCEAGIVSLLKKETEGSQSNGSENSSDINLGLSRSPTLNNPMSCQPPFSLNPTSITQILHYSSKPDLQDDGFCNMFQNSDAQKNFWPWPGQQNHHLH 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01311 272 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Spst1g01311 272 Coils Coil 126 174 - -
Spst1g01311 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 67 220 IPR045224 GO:0003700
Spst1g01311 272 SUPERFAMILY Homeodomain-like 73 135 IPR009057 -
Spst1g01311 272 CDD homeodomain 79 135 IPR001356 GO:0003677
Spst1g01311 272 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Spst1g01311 272 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Spst1g01311 272 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Spst1g01311 272 Gene3D - 74 149 - -
Spst1g01311 272 MobiDBLite consensus disorder prediction 188 211 - -
Spst1g01311 272 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Spst1g01311 272 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Spst1g01311 272 SMART HOX_1 77 138 IPR001356 GO:0003677
Spst1g01311 272 Pfam Homeodomain 79 132 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01311 Spst-Chr1 16079480 16081602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01311 25 263 Homeobox Transcription Factor Family AT3G01220 48.387 5.62e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst1g01311 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01311 K09338 - gmx:100797920 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01311 1 16079480 16081602 Spst1g01311 1 16079480 16081602 ECH
Spst4g00180 4 1907276 1909606 Spst1g01311 1 16079480 16081602 PCT