Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01301 ATGGCACTGTATTTTAATTATCCATTGTGTTGTGACAATGCATTGATGGAAAGTAGGTCAATGGCAGTGGACAGCAGAGCAATAGTTTACAAGCATGCAGCGTATGGACCGCGTAATGAGGCTTCACCATTGACAAGTATTCAGAGGTGCTCACTCGCCGCCATGGCTAATAACTGGTTAAATGTTGCAACCTTTGACCACATACCCATTGGTTCAGAGATTGAAGAGAAGAGAGTTACAAAGGAAGATAAGGCCAAATCTGCCAAAACTGAGATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGAAGATGCTGGAAACAGTAGAAAAGGATTATCAGTCACTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGATTCAAAGAAGGGTGTGGTTGATTCGTCTAATTCCCATGATCATCAAAGTGAAGAGTCTGAGTTTGTGTCACTTTGCCTTGGAAGGAGTCGAACGGAGTCTAAGAAGGGGGCTAGAATTGGAGACTCCAACAAAGCTAAAGAAAAAGATGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACTTGTTGGCAATGGAGGTTGTGTCTGATTTTAGTCCCATGAACATCTCAGAAGAACCAAAGGAAACGGATGCAGAGGGAACATTGTCAACAAGTCAATCAGCAAAAGTGATTAATGTAAACGAAGATATTTCAAATCAAATGCCAGCCAAGAGAGCAAGGGTATCTGTGAGAGCTAGATGTGATTCTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTTAGGAAGCAGGTGCAAAGGTGTTCTGAGGACCTGTCCATCTTAATCACCACCTATGAAGGAGCCCATAACCACCCACTTCCAGTTTCAGCCACAGCCATGGCTTCAACCACTTCTGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCACCTTTCAAGCCACATTTCTACATCTTTTGGAAATGCTCCTACCACACTACTCAATGGTCTAAGTTTCAGTGACCAGTTTCATGAACCCAAAGCCAAACAAATCTTCTCACCACCAAACCATGCCTTACCACATATGTTCTCAACAATCACCCTAGACCTGGCTTCTTCAGCTCCTTCCTCCTCTTCAACTCAATTCCACCATGGCTTACCGTCAACCATGGCTTCAATTTCAAACCCAAGATTTTCCTCAGCTAGTCTCAGCTTTTGTTCACCCGAGCATAACTTCATCCCATCCATTTGGGCTAAGGGTTTTCATGATAATGGCACAACCACAACACCAATTAAAGTCCCCACAAGGCCAGTTATACAGTCAAATAATTTCCAACAACCTTTCTACCAACAATGCACAACAAACCAGACTCCCTCCAGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTCTTCGCTCAGCAATAGCTGCTGCAGTTTCATCAATAGTTGAACATGGATCAAACAGTAGTAAACAAGAGGTATCAGAGAATGTTCTTCGTTCAGGGTTGAACTTAAAACTTGGGGAGCATCTTCAATTGGCTTCCCCCAATCCCTTAGACCAGAATGGGAAAGGATGCTTAACAGGCTACTTCAAGAGTTTATCCTCTAAAAGTTCTGAGGATGAAAACTTCATTCTTCTCCAACACCCATTGCCAATTTCTTACTCCAAGAGTATCACAAATCAGATCAACCACCATGTTCCAGAAATGAACACGCATCATTAG 1815 0.432 MALYFNYPLCCDNALMESRSMAVDSRAIVYKHAAYGPRNEASPLTSIQRCSLAAMANNWLNVATFDHIPIGSEIEEKRVTKEDKAKSAKTEMGEVKEENERLKKMLETVEKDYQSLQLRFFDILHKDDSKKGVVDSSNSHDHQSEESEFVSLCLGRSRTESKKGARIGDSNKAKEKDVGPNLTLGLDSKHLLAMEVVSDFSPMNISEEPKETDAEGTLSTSQSAKVINVNEDISNQMPAKRARVSVRARCDSPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCSEDLSILITTYEGAHNHPLPVSATAMASTTSAAASMLLSGSSTSHLSSHISTSFGNAPTTLLNGLSFSDQFHEPKAKQIFSPPNHALPHMFSTITLDLASSAPSSSSTQFHHGLPSTMASISNPRFSSASLSFCSPEHNFIPSIWAKGFHDNGTTTTPIKVPTRPVIQSNNFQQPFYQQCTTNQTPSREALAETITKAISTDPSLRSAIAAAVSSIVEHGSNSSKQEVSENVLRSGLNLKLGEHLQLASPNPLDQNGKGCLTGYFKSLSSKSSEDENFILLQHPLPISYSKSITNQINHHVPEMNTHH 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01301 604 Gene3D WRKY domain 240 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01301 604 MobiDBLite consensus disorder prediction 160 179 - -
Spst1g01301 604 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 75 521 IPR044810 GO:0003700
Spst1g01301 604 MobiDBLite consensus disorder prediction 160 176 - -
Spst1g01301 604 SUPERFAMILY WRKY DNA-binding domain 248 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01301 604 MobiDBLite consensus disorder prediction 131 150 - -
Spst1g01301 604 FunFam probable WRKY transcription factor 31 240 317 - -
Spst1g01301 604 Pfam WRKY DNA -binding domain 256 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01301 604 Coils Coil 85 119 - -
Spst1g01301 604 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01301 604 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01301 604 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01301 Spst-Chr1 15747518 15750569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01301 92 564 WRKY Transcription Factor Family AT5G15130 42.406 3.89e-79 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g01301 WRKY 7.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01301 - - gmx:100780402 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01301 1 15747518 15750569 Spst1g01301 1 15747518 15750569 ECH
Spst1g01301 1 15747518 15750569 Spst3g04674 3 98558976 98563009 ECH
Spst1g01301 1 15747518 15750569 Spst9g02323 9 54479520 54484719 ECH
Spst2g01560 2 14303160 14309711 Spst1g01301 1 15747518 15750569 ECH