Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01296 ATGGCAGGAAGTTCAAGCAAGGTTGCCCTTATCTTGGTGGCTTTTGCCATTACTATTCCGTGCCTTGAGGCTGGCATAGGTGAGTTTGACGATTTTCTCAAAGCACAATCAGAAGAGGCCCATGAAATCGCTCTTGAATCCTACGTGCCTGACCCTGAAAACGTTACATCTGATCTCAATTTGCAAGTTCACTCGGCTTTGGGGGAGGCGTTGAAGGAGGAATCAAACCACACAAGAAGGGAACTGAAGCAGAAATACAGTGGACCATGCTTGGCCCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAAACTGGGCTAAAGACCGTTTTAAGTTAGCCCATTGTGTCAAGGGTTTCGGAAGAAGGGCCGTGGGAGGACTCAATGGCAAAATCTACATTGTCACTGATCCCTCTGACAATGAACCCGTTAACCCTAAACCTGGAACCCTAAGGTACGGTGTTCTCAAAAAGGACCCACTATGGATCACATTTAAACATAGCATGGTCATCAAGTTGAATTACGAGTTGTTGATTGCTTCTGACAAAACCATCGACGGTCGCGGGGCGAATGTGGTGATCAAGGGTGGTGCAGGCCTTACCATGCAGTTTGTGAACAACATTATTATCCACGGGCTTCGCATACAAAAGATCAAGTCCATGGATGGTGGCATGCTTAGGGACTCTTGGAACCACGTTGGAGTAAGAACCAGGTGTGACGGAGATGCCATCTCCATTTTTGGCTCTTCAAACATTTGGATTGATCATATCTCACTCTCTGATTGCGAGGATGGTCTCATCGACATTATCCAGGGTTCCACTGGCATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTTATGTTATTTGGAGCCAGCGACACCTACAACGGTGACAAGATAATGCAGGTGACAGTGGCATTCAACCATTTCGGGCAGGGCCTGATTCAGAGAATGCCCCGATGCAGATGGGGTTTCTTCCACGTGTTGAACAACGACTACACTCACTGGCTGATGTATGCAATTGGTGGAAGCTCAGGGCCAACGATTCTGAGTCAAGGAAACCGCTTCATTGCACCAAACAACGACGCTGCCAAGGAAGTCACGCACAGGGACTATGCACAACCTTCTGTGTGGTCCAAATGGCAATGGAGATCACAGAACGATTTGTTCATGAATGGGGCTACCTTTATTGAGTCAGGGAAACCTATTGGGAAACTACCATTCAACAAAGGGTTCCTCATGAAACCTAGACATGGGTCACAGGCCAACAGGCTTTCACGCTTTTCCGGGGCCCTCAATTGCATTGTGGGGAAGCCTTGCTAG 1332 0.4775 MAGSSSKVALILVAFAITIPCLEAGIGEFDDFLKAQSEEAHEIALESYVPDPENVTSDLNLQVHSALGEALKEESNHTRRELKQKYSGPCLALNPIDRCWRCKKNWAKDRFKLAHCVKGFGRRAVGGLNGKIYIVTDPSDNEPVNPKPGTLRYGVLKKDPLWITFKHSMVIKLNYELLIASDKTIDGRGANVVIKGGAGLTMQFVNNIIIHGLRIQKIKSMDGGMLRDSWNHVGVRTRCDGDAISIFGSSNIWIDHISLSDCEDGLIDIIQGSTGITISNCHMTKHNDVMLFGASDTYNGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEVTHRDYAQPSVWSKWQWRSQNDLFMNGATFIESGKPIGKLPFNKGFLMKPRHGSQANRLSRFSGALNCIVGKPC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01296 443 PANTHER PECTATE LYASE 18-RELATED 41 441 IPR045032 GO:0030570
Spst1g01296 443 Gene3D - 93 436 IPR012334 -
Spst1g01296 443 Pfam Pectate lyase 179 359 IPR002022 -
Spst1g01296 443 SMART amb_all 168 365 IPR002022 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Spst1g01296 443 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Spst1g01296 443 Pfam Pectate lyase, N terminus 26 82 IPR007524 GO:0030570
Spst1g01296 443 SUPERFAMILY Pectin lyase-like 94 433 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01296 Spst-Chr1 15695984 15698052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01296 10 443 Polysaccharide Lyase AT5G15110 52.484 2.72e-177 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01296 K01728 - gmx:100780236 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01296 1 15695984 15698052 Spst1g01296 1 15695984 15698052 ECH
Spst1g01296 1 15695984 15698052 Spst9g02322 9 54446571 54450029 ECH