Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01283 ATGGGGGAACTATGGACACAAATGGGCTCATTGATGGCCACAATCATGTTTGTGTATGCCATGGTAGAGCGTTTTTTCCCGGCTGCACTTCGTGACACTCTTCAAATCCACACTCAGAAAGTGGTGAATTTGTTGTACCCTTATGTGCAAATCACCTTCCCTGAGTTCTCTGGTGAGAGGCTCAAACGTAGTGAAGCTTACACTGCCATCCAAACTTACCTCAGTGAGAACTCTTCCCAACTAGCCAAAAGGCTAAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCTTTGGTGCTTAGCATGGACGATGATGAAGAGGTCACTGATGAGTTCCAAGGTGTGAAGATTTGGTGGGCTGCTAGCAAAACTGCTTCTAACCCTCATGCCTATTCTTTCTCTTACTACTCTCCCCCGGATGGTAAGAGGTATTTCAAGCTAACTTTCCATAAAAAGCATAGGGATCTCATCACTGTGTCTTACATCAAACATGTCTTGGAAGACGGGAAGGAAATTGCCTTGAGAAATAGGCAAAGGAAGTTGTACACCAACAATCCTAGCAGTGGTTGGTATGGCTACAAACAGTCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCAACGTTTGAGACTCTTGCAATGGAGCATAGAAAGAAGGAAGAGATCATCAACGACCTTGTTAAGTTCAGAAATGGGAAGGATTACTATGCCAAGATTGGGAAGGCTTGGAAGCGGGGCTATTTACTCTATGGTCCTCCTGGGACTGGTAAGTCTACCATGATAGCTGCAATGGCTAATTTCATGAACTATGATGTCTATGATCTTGAGCTGACAGCTGTGAAGGACAACACTGAGTTGAGGAAGTTGTTAATTGAAACTTCTAGTAAGGCTATTATAGTGGTGGAAGACATTGATTGCTCACTTGATCTCACTGGCCAGAGGAACATGAGGAAGGAAAAGGGTGAGGAAGAGGAGCCAAAAGATCCTAATAAAAAGGAAGAAGAGGAGGGTAACAAGAGTAGTAAGGTAACTCTATCTGGGTTGTTGAATTTCATTGATGGTATTTGGTCAGCATGTGGGGGAGAGAGGATTATTATTTTCACAACCAACTTTGTGGACAAGCTTGATCCTGCTCTTATTAGGACAGGTAGGATGGACAAGCACATTGAATTGTCCTATTGCCGCTTTGAAGCTTTCAGGGTGCTTGCCAAGAACTACTTGGATATTGACTCACACCATTTGTTTGTAAGGATTGACAATTTGTTGGAAGTGACCAATGTGACTCCTGCTGATGTTGCTGAGAATCTCATGCCTAAGTGTGTGAATGAAGATGTAGAGACTTGCTTGCTGAATTTGATTCAAGCTCTTGAGAAAAAGGTGGTAGAAGAAGAAGAATCAGATGATTCAGAGTTGAATGAAGAAAAGGACAAGAAGGAACATACTCAACAGGAGATGAAAAGTAATAGGCACACTGTGGAAGATGTGAAGGAAAATGGATTCCTCCTTTGA 1506 0.4303 MGELWTQMGSLMATIMFVYAMVERFFPAALRDTLQIHTQKVVNLLYPYVQITFPEFSGERLKRSEAYTAIQTYLSENSSQLAKRLKAEVVKDSQNPLVLSMDDDEEVTDEFQGVKIWWAASKTASNPHAYSFSYYSPPDGKRYFKLTFHKKHRDLITVSYIKHVLEDGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMEHRKKEEIINDLVKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRNMRKEKGEEEEPKDPNKKEEEEGNKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRTGRMDKHIELSYCRFEAFRVLAKNYLDIDSHHLFVRIDNLLEVTNVTPADVAENLMPKCVNEDVETCLLNLIQALEKKVVEEEESDDSELNEEKDKKEHTQQEMKSNRHTVEDVKENGFLL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01283 501 Gene3D - 196 388 IPR027417 -
Spst1g01283 501 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Spst1g01283 501 CDD RecA-like_BCS1 221 390 - -
Spst1g01283 501 Gene3D - 389 463 - -
Spst1g01283 501 MobiDBLite consensus disorder prediction 470 495 - -
Spst1g01283 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 440 IPR027417 -
Spst1g01283 501 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Spst1g01283 501 Pfam ATPase family associated with various cellular activities (AAA) 247 391 IPR003959 GO:0005524|GO:0016887
Spst1g01283 501 MobiDBLite consensus disorder prediction 314 338 - -
Spst1g01283 501 MobiDBLite consensus disorder prediction 461 501 - -
Spst1g01283 501 Coils Coil 460 480 - -
Spst1g01283 501 SMART AAA_5 242 394 IPR003593 GO:0016887
Spst1g01283 501 PANTHER BCS1 AAA-TYPE ATPASE 7 460 - -
Spst1g01283 501 FunFam AAA-ATPase ASD, mitochondrial 198 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01283 Spst-Chr1 15527602 15529107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01283 217 390 Calmodulin-binding Proteins AT3G56690 28.492 3.31e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01283 - - gmx:100777731 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01283 1 15527602 15529107 Spst1g01283 1 15527602 15529107 ECH
Spst4g00152 4 1476554 1477957 Spst1g01283 1 15527602 15529107 PCT
Spst1g01283 1 15527602 15529107 Spst4g00153 4 1479577 1481634 PCT