Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01282 ATGGCTTCAGAGTGGTCTATACTAGGCACATTCACTGCAACAGTTATGATAGCATACACTCTGTTTGATAAGTTCATCCCAACCCATATCCGTTCCTATGTCCAAATATACGTTCACAAACTAATTGGTTTTCTTTCTCCTTACATCCAAGTCACCTTCCCCGAATTCTCAGGTGAACGTCTTAAACGCAGTGGGCTTTTCACTTCCATCCAAACCTATCTCATTGAAAACTCTTCTCAGCGAGCCAGAAAACTCAAAGCTGAACCCACCGACAACAGCAACAACCCCTTTCTTCTTTCCATGGACGACAACGAAGAAGTCACAGAGATTTTCCAAGGGGTGAAGCTCTGGTGGGGTTCTCACAAAACCATGGCCAAAACACAGTCGTTTTCGTTTTACCCTAGTTCTGATGAGAAGAGGTTCTACACCCTCACCTTTCACAAGCGCCATAGAGACCTCGTTTCACGCACTTACATCCCCCACGTGTTGGAACAAGGCAAGTCGATCAAACTGAAGAGTCGGCAACTGAAGCTTTTCACCAACAATTCTTACACCGGTTGGGGAGGGTATAGAAAATCGAAGTGGAGCCACGTTGTGTTTGAGCACCCTGCGAGGTTTGAAACCCTTGCTATGGAGAAAACAATGAAGGAGGAAATTATAGATGATCTTATCACGTTCAAGAATGGAAAGGAATATTATGACAAGATAGGGAAGGCTTGGAAGCGTGGCTATTTGCTGTATGGTCCTCCGGGAACGGGAAAATCTACCATGATTGCTGCTATGGCAAATTTTATGTACTATGATGTGTATGATCTTGAGTTGACAGCAGTGAAGGATAACACACAGTTAAGGACACTGCTGATTGAGACAACCAGTAAGTCTATAATTGTGATTGAAGATATCGATTGTTCTATTGATCTCACTGGGAAGAGGATGGTGAAAAAGGAGAAGGAAAAGAGTGAGAACGTGAAGGATCCTATTAAGAAGGCTGAGGAAGAAGAGAGCAAAGAGAGTAAGGTGACTTTGTCGGGTTTGTTGAATTGCATTGATGGGATTTGGTCAGGTTGCGCAGGAGAAAGGATCATTATTTTTACTACAAACCATGTGGACAAGCTAGATCCTGCTCTTATTAGAAGTGGAAGAATGGACAAGAAAATAGAGCTATCTTATTGTTGCTACGAGGCTTTTAAGGTTCTTGCCAAGAATTATTTGGATGTTGATTATCATCGTTTGTTTTCTGTTGTTGAGGGGTTGTTGAAAGAGACAAAGATGACACCTGCTGATGTTGCTGAGAACATGATGCCGAAGTCAAAGAGTGATGATGTGAACACATGCTTGAAGAAGTTGATTGAATCTCTTGAGAAGGCAAAGAAGAAGGCTGAGGAAGAAGCACAAAAGAAGGCTGAGGAAGAAGAAGCAAAGTTGAAGGAAGAGAAGGAAAAGGAACAGAAACAGGAACAGTTAGCAGTGGAAGAGGCAAAGAGTGATGATAAAGCTGGGAAAGAGGTGAAGGAAAATGGTTTCCATTGA 1530 0.4255 MASEWSILGTFTATVMIAYTLFDKFIPTHIRSYVQIYVHKLIGFLSPYIQVTFPEFSGERLKRSGLFTSIQTYLIENSSQRARKLKAEPTDNSNNPFLLSMDDNEEVTEIFQGVKLWWGSHKTMAKTQSFSFYPSSDEKRFYTLTFHKRHRDLVSRTYIPHVLEQGKSIKLKSRQLKLFTNNSYTGWGGYRKSKWSHVVFEHPARFETLAMEKTMKEEIIDDLITFKNGKEYYDKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMYYDVYDLELTAVKDNTQLRTLLIETTSKSIIVIEDIDCSIDLTGKRMVKKEKEKSENVKDPIKKAEEEESKESKVTLSGLLNCIDGIWSGCAGERIIIFTTNHVDKLDPALIRSGRMDKKIELSYCCYEAFKVLAKNYLDVDYHRLFSVVEGLLKETKMTPADVAENMMPKSKSDDVNTCLKKLIESLEKAKKKAEEEAQKKAEEEEAKLKEEKEKEQKQEQLAVEEAKSDDKAGKEVKENGFH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01282 509 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Spst1g01282 509 FunFam AAA-ATPase ASD, mitochondrial 196 386 - -
Spst1g01282 509 MobiDBLite consensus disorder prediction 459 509 - -
Spst1g01282 509 Pfam Domain associated at C-terminal with AAA 26 121 IPR025753 -
Spst1g01282 509 PANTHER BCS1 AAA-TYPE ATPASE 9 461 - -
Spst1g01282 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 450 IPR027417 -
Spst1g01282 509 Coils Coil 443 496 - -
Spst1g01282 509 Pfam ATPase family associated with various cellular activities (AAA) 245 389 IPR003959 GO:0005524|GO:0016887
Spst1g01282 509 Gene3D - 387 455 - -
Spst1g01282 509 CDD RecA-like_BCS1 219 388 - -
Spst1g01282 509 Coils Coil 313 333 - -
Spst1g01282 509 Gene3D - 194 386 IPR027417 -
Spst1g01282 509 SMART AAA_5 240 392 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01282 Spst-Chr1 15523466 15524995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01282 206 494 Miscellaneous Gene Families AT3G02450 26.000 1.44e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01282 1 15523466 15524995 Spst1g01282 1 15523466 15524995 ECH
Spst4g00151 4 1473436 1474950 Spst1g01282 1 15523466 15524995 PCT
Spst1g01282 1 15523466 15524995 Spst4g00152 4 1476554 1477957 PCT