Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01279 ATGACTGAAAAGAAAGATGATGAGGCTGGGTTGTGTTTGAGTTTGAGTCTGGGAGTGAAACAACAACCTTTGAAGGTGAATCACATGCACCAGCCTCAACAACAGCAACCTCAACCTGTTCCCATAAATCACAACAAAACTCTCTTTGCTGACTTGTTTCAGTTACCTGATCGGAACTCCGATGCGACACGAGGAATCGACGTGAACTCGACAGCGGAGTGCGAGGAAGAGAACGGCGTTTCCTCGCCGAACAGTGCCGTGTCAAGCGTGAGCGGTGGCAAACGTAGCGAGAGGGACGACGATAATGCTGCCTTGGTGACAGGAGAGAGGACTTCGTGCTCAAGGGGGAGCGACGAGGATGATGGTGGCGTCGGAGATGGCGACGGTGGGAGGAAGAAATTGAGACTGACGAAAGAGCAGTCCATGGTTTTGGAAGAAACTTTCAAGGAGCATAATACACTCAATCCGAAACGAAAGCAAGCTTTGGCAGAGGAGTTGAATCTGAAGCCTAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGAACTAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAGATGTTGTGAGAATTTAACTGAAGAGAATAGAAGGTTGCATAAGGAGGTCCAAGAGCTTAGGGCTTTGAAATTATCCCCACAAATGTACATGCACATGAACCCTCCCACCACACTTACAATGTGCCCTTCTTGTGAGCGTGGTCACTCCTCTTCGTCCTCCTCCCCTGCCACCGTCCAGTCAGCGGCAGCGACCCCGAGTACCCGCAAACTGTTTGGCGCAAGCATCCGGCGGCCGGTGGCACCGGTCAGCACCTGGCCGTTTGACGGCTCAATTCCTCGGCCATAA 879 0.5063 MTEKKDDEAGLCLSLSLGVKQQPLKVNHMHQPQQQQPQPVPINHNKTLFADLFQLPDRNSDATRGIDVNSTAECEEENGVSSPNSAVSSVSGGKRSERDDDNAALVTGERTSCSRGSDEDDGGVGDGDGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERGHSSSSSSPATVQSAAATPSTRKLFGASIRRPVAPVSTWPFDGSIPRP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01279 292 SMART HOX_1 129 191 IPR001356 GO:0003677
Spst1g01279 292 MobiDBLite consensus disorder prediction 26 43 - -
Spst1g01279 292 MobiDBLite consensus disorder prediction 71 133 - -
Spst1g01279 292 Gene3D - 135 185 - -
Spst1g01279 292 SUPERFAMILY Homeodomain-like 116 188 IPR009057 -
Spst1g01279 292 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Spst1g01279 292 MobiDBLite consensus disorder prediction 241 265 - -
Spst1g01279 292 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Spst1g01279 292 MobiDBLite consensus disorder prediction 74 92 - -
Spst1g01279 292 Pfam HD-ZIP protein N terminus 3 99 IPR006712 GO:0005634
Spst1g01279 292 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Spst1g01279 292 Coils Coil 200 220 - -
Spst1g01279 292 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Spst1g01279 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 261 - -
Spst1g01279 292 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
Spst1g01279 292 FunFam Homeobox-leucine zipper protein 18 115 192 - -
Spst1g01279 292 MobiDBLite consensus disorder prediction 24 45 - -
Spst1g01279 292 MobiDBLite consensus disorder prediction 113 133 - -
Spst1g01279 292 MobiDBLite consensus disorder prediction 241 271 - -
Spst1g01279 292 CDD homeodomain 131 188 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01279 Spst-Chr1 15498031 15500459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01279 26 244 Homeobox Transcription Factor Family AT3G60390 60.494 1.16e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst1g01279 HD-ZIP_N 9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01279 K09338 - gmx:100819624 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01279 1 15498031 15500459 Spst1g01279 1 15498031 15500459 ECH
Spst4g00788 4 34884916 34887890 Spst1g01279 1 15498031 15500459 PCT