Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01277 ATGAGAATTGCTTCTCGTTTTTCTTCTTCTTCTTCTTCTTCGTCTTCCTCCAGTTGGTCGCGTTTCTGGTCGTCGGCGCTCCGATCCAAGCGCCTTGCGACGGCGGCGGAGAAGGCCTCCCGTGACAGCTCCGAACTCGGCCTCTCCCGCCGCCTCGGCGTCATCGACCTCGTACTCCTCGGAATCGGCGCCTCCATCGGCGCCGGCATCTTCGTCGTCACCGGCACCGTCGCCCGCGACGCAGGACCCGGAGTAACAATAAGTTTTATGCTTGCGGGAGCGTCCTGTGTTATAAATGCACTCTGTTATGCTGAACTAGCTTCTCGATTTCCCGCTGTTGTTGGAGGAGCTTATCTATATACATACACAGCTTTTAATGAACTTACGGCTTTTCTTGTTTTTGGACAATTAATGCTTGACTATCACATTGGAGCAGCTAGTATAGCAAGAAGCCTAGCTAATTATCTAATAAATATTCTAGAACTCTTCCCTGTTTTCAAAGACAACATTCCAAACTGGATTGGGCATGGTGAAAACATTGGAGATGTGTTATCCATCAATATCCTGGCTCCTATTCTGCTAATGCTTCTCACTTTGATTCTATGCCAAGGAGTTCATGAATCGTCAGTTGTGAATTGTATTATGACCGTGACCAAGGTAATCATTGTTATCATTGTCATTTTTGCTGGAGCATTCGAGGTTGATGTTTCCAACTGGTCTCCATTTGCTCCAAATGGTTTAAAAGCTATATTTACCGGGGCTACAGTAGTGTTCTTTGCATATGTTGGATTTGATGCTGTTGCCAATTCTGCCGAAGAATCTAAGAGGCCCCAGCGGGATTTGCCTATTGGCATAATAGGAAGCCTCTTAGTATGTGTTGTATTGTACATTGGAGTATGCCTGGTGATTACTGGAATGGTTCCGTACAATCTTCTAGGAGAAGATGCTCCTTTGGCCGAAGCTTTTACGTCTAAGGGATTAAAATTTGTTTCTGTTCTGATTAGCATTGGTGCTGTTGCCGGACTTACAACAACACTCCTTGTTGGTCTCTATGTTCAGTCCCGGCTATACCTTGGGCTTGGCAGGGATGGGATGCTACCCTCAATATTTGCGAGGGTTCACTCCAAACGCCACACCCCTATTCATTCTCAGGTCTGGGTTGGCTTCGTTGCCATTGTTTTGTCTGGGCTGTTGAATGTGCATGTGCTCTCTCACATTCTTTCCGTTGGTACACTGACTGGATATTCGGTTGTCTCAGCATGCGTCGTTGTACTTCGCTGGAAGGATAAGACAGGTACTCAAGTGTCATCTTCTGCTGAGCGGGAAGGTGTAATTTGCCTCATTGCCGTTGCTCTTTGTGGATTTGCTACTGGGCTCTTGTACCGTTATGATGCTTCCTTTATTTTTATGATACTGACCATAGTTATCGCATCTGGTGCTTCTGCTGCTCTTGTTTTCCGCCAGGTTTACGCAGATGCCCCAGGGTTTTCCTGCCCAGGGGTTCCCCTTCTTCCAAATATTTGCATATTTTTCAACATGTTCTTATTTGCCCAGTTACATCAAGAAGCGTGGGTGAGATTTGTGATTCTTTCTATTATCATGGTTGGTGTTTATGCAATATATGGCCAGTATCATGCGAACCCCAGTGCAGAAGACCACATCTATATTGAGGCACCTTTAGAAGAAGCTCGATGA 1695 0.4602 MRIASRFSSSSSSSSSSSWSRFWSSALRSKRLATAAEKASRDSSELGLSRRLGVIDLVLLGIGASIGAGIFVVTGTVARDAGPGVTISFMLAGASCVINALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFGQLMLDYHIGAASIARSLANYLINILELFPVFKDNIPNWIGHGENIGDVLSINILAPILLMLLTLILCQGVHESSVVNCIMTVTKVIIVIIVIFAGAFEVDVSNWSPFAPNGLKAIFTGATVVFFAYVGFDAVANSAEESKRPQRDLPIGIIGSLLVCVVLYIGVCLVITGMVPYNLLGEDAPLAEAFTSKGLKFVSVLISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGMLPSIFARVHSKRHTPIHSQVWVGFVAIVLSGLLNVHVLSHILSVGTLTGYSVVSACVVVLRWKDKTGTQVSSSAEREGVICLIAVALCGFATGLLYRYDASFIFMILTIVIASGASAALVFRQVYADAPGFSCPGVPLLPNICIFFNMFLFAQLHQEAWVRFVILSIIMVGVYAIYGQYHANPSAEDHIYIEAPLEEAR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01277 564 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 38 545 - -
Spst1g01277 564 Pfam Amino acid permease 52 458 IPR002293 GO:0016020|GO:0022857|GO:0055085
Spst1g01277 564 Pfam C-terminus of AA_permease 496 545 IPR029485 -
Spst1g01277 564 Gene3D Amino acid/polyamine transporter I 48 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01277 Spst-Chr1 15484029 15488865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01277 10 489 Organic Solute Cotransporters AT1G05940 71.399 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01277 K03294 - gmx:100804988 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01277 1 15484029 15488865 Spst1g01277 1 15484029 15488865 ECH
Spst4g00117 4 1163796 1165505 Spst1g01277 1 15484029 15488865 PCT