Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01275 ATGAATCGTAGAGTGAGGAGGAAGGTGGCGAGGAAAAGCAAAGGGAATGTGGTGCAATCTAGTTTCCCTGAAGTTCTAGATGAGATTTTGCATTTGGAACCCCAAGGAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTTTCTTGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAGACATGGAGGTCTCTTGGAAGCTCCCCGTGTTTGTGGACTTCTCTGGATCTTCGTTCCCACAAATTTGATGCTTGCATGGCTTCATCACTTGCTCCCAGGTGTGTGCATCTACAGAAGCTCAGGTTTCGGGGGGCGGAGTCTGCTGATGCAATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGCTTACTGATGCAACACTTTCAGTGATTGTGGCTCGGCATGATTCACTTGAGAGCCTTCAGCTTGGACCCGATTCTTGTGAGAGAATAAGTAGTGATGCTATTAGGGCAATAGCTCATTGCTGTCCTAACTTGAATAAACTTAGACTCTCGGGTATTAGGGATGTAAATGCTGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAAGTTGTTCGATATTGGGTTCATTGACTGTCTGAATGTTGATGAGGCTGCACTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTTGCGGGGACGTCAAGTATGAAGTGGAGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATCGGGTTAGATGTTTCAAGAACCGATATTGGTCCATCTGCTGTTTTCAGAATGTTATCCTTATCACAGAATTTGAGGGTTTTGATTGCTCTAAATTGTTCTATCCTTGAAGAAGACACTAGCTTTTCTGCCAATAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGGTAATACAAAGAAAGGAAAGAATATGTTTTTGGACTGGAGGACCTCAAAGAATAATGATAAGGATCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTATCCCATACACTTTTGAGTTCTGCTGAGAGTCCCCAGCAGGGTCTTGATAATTTCTGGGTAGAACAAGGTGGAGCGCTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCAGCCACAGGACTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATAGATTGTGGTAGGGCTGAAGCAGTAATGCGAGACGGGGGCATACGCCTCCTACTTGGCCTGGCAAAATCATGGAGGGAAGGGCTTCAATCTGAGGCAGCTAAGGCCATTGCAAATTTATCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCCATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAGGAGCACAAGGGTGCCATAGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCTTCAAGTGGAGATGGAGTTTTAGAACGAGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCTCTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCACGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGAGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCGGCAGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCATTCTCCCCACGACGGTGTCAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAAGCTATAGCTGCATCTGGTGGTGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTCCAAGAGAGGGCTGCTGGGGCTCTGTGGGGATTGTCAGTGTCGGAAACTAATAGGTACTTGGAAGAGTTCATCAAGTGCCATGATCCTCTTGATATCTTAAGAGCGGTGGGTGATTTTGCTGTTTGGATTCTTTTTGAATGTTGGCATCTTATTGAAATTGATACAATTTCTTGTGAAATGGAAATGTTAATTCAACTACTGTTGAGAGAAGAAAGGATTGAGTTAACTAACCTCTTTAGGAAATAG 2226 0.4438 MNRRVRRKVARKSKGNVVQSSFPEVLDEILHLEPQGVVDWNCLPDDTVIQLFSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHKFDACMASSLAPRCVHLQKLRFRGAESADAIIHLRAKNLRELSGDYCRKLTDATLSVIVARHDSLESLQLGPDSCERISSDAIRAIAHCCPNLNKLRLSGIRDVNADAINALAKHCPKLFDIGFIDCLNVDEAALGNVLSVRFLSVAGTSSMKWSVVSHLWHKLPNLIGLDVSRTDIGPSAVFRMLSLSQNLRVLIALNCSILEEDTSFSANKYKNKLLVSLRTDIFKGLASLFFGNTKKGKNMFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLSSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTHSPHDGVRQEAAGALWNLSFDDRNREAIAASGGVQALVALAQACANASPGLQERAAGALWGLSVSETNRYLEEFIKCHDPLDILRAVGDFAVWILFECWHLIEIDTISCEMEMLIQLLLREERIELTNLFRK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01275 741 SUPERFAMILY ARM repeat 371 685 IPR016024 -
Spst1g01275 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Spst1g01275 741 SMART fbox_2 43 83 IPR001810 GO:0005515
Spst1g01275 741 Gene3D Ribonuclease Inhibitor 33 313 IPR032675 -
Spst1g01275 741 Gene3D - 525 589 IPR011989 -
Spst1g01275 741 Gene3D - 375 524 IPR011989 -
Spst1g01275 741 SMART LRR_CC_2 124 149 IPR006553 -
Spst1g01275 741 SMART LRR_CC_2 150 177 IPR006553 -
Spst1g01275 741 SMART LRR_CC_2 204 229 IPR006553 -
Spst1g01275 741 SMART LRR_CC_2 178 203 IPR006553 -
Spst1g01275 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Spst1g01275 741 FunFam Protein ARABIDILLO 2 355 502 - -
Spst1g01275 741 SMART arm_5 630 673 IPR000225 GO:0005515
Spst1g01275 741 SMART arm_5 458 498 IPR000225 GO:0005515
Spst1g01275 741 SMART arm_5 417 457 IPR000225 GO:0005515
Spst1g01275 741 SMART arm_5 499 542 IPR000225 GO:0005515
Spst1g01275 741 SMART arm_5 543 584 IPR000225 GO:0005515
Spst1g01275 741 SMART arm_5 589 629 IPR000225 GO:0005515
Spst1g01275 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Spst1g01275 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Spst1g01275 741 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Spst1g01275 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Spst1g01275 741 Pfam F-box-like 40 86 IPR001810 GO:0005515
Spst1g01275 741 Gene3D - 590 687 IPR011989 -
Spst1g01275 741 PANTHER PROTEIN ARABIDILLO 1 1 678 - -
Spst1g01275 741 SUPERFAMILY RNI-like 38 293 - -
Spst1g01275 741 CDD F-box_AtADLO1-like 39 80 - -
Spst1g01275 741 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Spst1g01275 741 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Spst1g01275 741 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Spst1g01275 741 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Spst1g01275 741 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Spst1g01275 741 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01275 364 668 U-box Gene Family AT2G23140 30.719 1.60e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01275 - - gmx:100805530 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01275 1 15470423 15476475 Spst1g01275 1 15470423 15476475 ECH