Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01266 ATGTCATCCACCACCACTGATTCGGAGTGTGCATATTTCGAACAAATTCAGCAATACCTCCTTCCCAATGATTCAGCCATTGTAACACCAGATCAAGCTTTTCCTAGCCCTAGGCATCTTAGTTGTTCGGATGCAAGTGTCCACTTTGAGCACCCTACTGAAGCGCGTGAAGTGAACGCGCCACCTAAATGGAGGCGTTACAGGGGTGTGAGGCGTCGGCCGTGGGGGAAGTTCGCAGCTGAGATAAGGGATCCAAAGAAAAATGGTGCTAGGGTTTGGCTCGGAACTTATGTGACTGAAGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCCAGATGCGAGGCCGAAAGGCCAAGCTGAATTTTCCTCATCTCATTGACTCGGATGAGTCATCGGAGCCGCCAAGTGTGGTGGCTTTAAAGAGGAGCTTGCCGGAGCCTTCTCCACCATCATCAGTGGATGATAGTTGTTGTAAGTCACAAGGGTCAAAGAGGAGAAAGAGCTTAGTTGATCTACTAAATAACTTAGCCAAGAATAGAAGCCAAGCCAAGGTGGTTGAAATGGCTTTAGAGGCAAATGTAGTTGAGCAATGGGTGAATGATTTGAACGATTGCACTCTAATCTGGTGCTCCTAG 639 0.4804 MSSTTTDSECAYFEQIQQYLLPNDSAIVTPDQAFPSPRHLSCSDASVHFEHPTEAREVNAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFQMRGRKAKLNFPHLIDSDESSEPPSVVALKRSLPEPSPPSSVDDSCCKSQGSKRRKSLVDLLNNLAKNRSQAKVVEMALEANVVEQWVNDLNDCTLIWCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01266 212 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Spst1g01266 212 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Spst1g01266 212 PANTHER DNA-BINDING DOMAIN 52 175 IPR044808 GO:0003700|GO:0009873
Spst1g01266 212 FunFam Ethylene-responsive transcription factor 2 65 125 - -
Spst1g01266 212 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Spst1g01266 212 CDD AP2 74 126 IPR001471 GO:0003700|GO:0006355
Spst1g01266 212 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Spst1g01266 212 MobiDBLite consensus disorder prediction 126 163 - -
Spst1g01266 212 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Spst1g01266 212 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Spst1g01266 212 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01266 Spst-Chr1 15234014 15234652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01266 53 172 AP2-EREBP Transcription Factor Family AT2G44840 61.983 3.12e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g01266 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01266 K09286 - gmx:102663872 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01266 1 15234014 15234652 Spst1g01266 1 15234014 15234652 ECH
Spst4g00770 4 34710517 34711155 Spst1g01266 1 15234014 15234652 PCT