Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01265 ATGGCTTCAGCCACCACGGATTCCGACTATGCATTCTTGGAATCTGTTCAACAATACCTACTTGGACATGATTCCATCAACTTCATGCCTGCAACCCACAAAGTTGCTTCTCATGATCCACTTTCAAACCATAAACGTGAGGCTCATTTGGAGAACATTATTTTCCGCAGTGAGGATGCAACTACTGTGGTGGCGCGTGATGTCCACGCGTCACCACCATGGAAGCATTACCGAGGTGTTAGGCGTCGGCCGTGGGGGAAGTTTGCAGCGGAGATAAGGGATCCAAAGAAGAATGGAGCCAGGGTTTGGCTTGGAACTTATGACACTGAAGAGAAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAATATGCGTGGTCGAAAAGCTAAGTTGAATTTTCCGCATCTTATTGACTCTGATAATTTTGATATAATTTCGTCAGAACCTGTGATAGAGAGAACACCCAAGAGGAAGTTGTCAGAAAATTTTCAACCTTCATCACCGTCATCGTCGTGTTCAGATGATAGCTCAGAGTCACAAGGGACAAAGAGGAGGAAGAACATGACTGATCTATTGAACAAGTTAGCCAAGAATAGAAGCCAAGCCAAGGTGGCATGA 618 0.4531 MASATTDSDYAFLESVQQYLLGHDSINFMPATHKVASHDPLSNHKREAHLENIIFRSEDATTVVARDVHASPPWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFNMRGRKAKLNFPHLIDSDNFDIISSEPVIERTPKRKLSENFQPSSPSSSCSDDSSESQGTKRRKNMTDLLNKLAKNRSQAKVA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01265 205 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Spst1g01265 205 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Spst1g01265 205 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Spst1g01265 205 MobiDBLite consensus disorder prediction 178 192 - -
Spst1g01265 205 MobiDBLite consensus disorder prediction 155 205 - -
Spst1g01265 205 CDD AP2 75 136 IPR001471 GO:0003700|GO:0006355
Spst1g01265 205 MobiDBLite consensus disorder prediction 160 177 - -
Spst1g01265 205 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Spst1g01265 205 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Spst1g01265 205 PANTHER DNA-BINDING DOMAIN 58 184 IPR044808 GO:0003700|GO:0009873
Spst1g01265 205 FunFam Ethylene-responsive transcription factor 2 75 135 - -
Spst1g01265 205 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Spst1g01265 205 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01265 Spst-Chr1 15231153 15231770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01265 76 179 AP2-EREBP Transcription Factor Family AT2G44840 59.615 1.45e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g01265 AP2 4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01265 K09286 - gmx:100806588 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00768 4 34704888 34705490 Spst1g01265 1 15231153 15231770 PCT