Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01264 ATGGATACTAATTATACCACAACCACTGTTACTACTACTACTACTACTACTTCAGAATTTGATGTGACATTTTCAGACCCTATTGAGCATTACATGTTTCATGATGAAGCAAATGCTTTGAACAACAGTGTTTTGGCCTCAAATGAGGATTGGTTCTCTGGGAATGGTGTGGAGGGTGGTAAAGCACAAGAGGAAGTTCCAAGAGGGACGAGGTACAAAGGAGTGAGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGATCCAAACAAAAGTAATAGGATTTGGCTTGGGACTTATGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAGTGCAGCTTTCAAGTTTAGAGGGTCCAAAGCCAAGCTCAACTTTCCTCAACTCATTCCACCGGTGGATGCACCAAGCACCCACATGGATAACCCTCCTTCTTCATCATCCGCATCTGAGGATCGTTCAGAAGGATCAAAGAAAAGGAAGGGACTAGCTGGTTTGCTGAATAAATTAGCACATGAAAGAAACAGGATTTGA 537 0.4283 MDTNYTTTTVTTTTTTTSEFDVTFSDPIEHYMFHDEANALNNSVLASNEDWFSGNGVEGGKAQEEVPRGTRYKGVRRRAHGKFAAEIKDPNKSNRIWLGTYDTEEEAALAYDSAAFKFRGSKAKLNFPQLIPPVDAPSTHMDNPPSSSSASEDRSEGSKKRKGLAGLLNKLAHERNRI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01264 178 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Spst1g01264 178 PRINTS Ethylene responsive element binding protein signature 110 130 IPR001471 GO:0003700|GO:0006355
Spst1g01264 178 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Spst1g01264 178 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Spst1g01264 178 MobiDBLite consensus disorder prediction 129 178 - -
Spst1g01264 178 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Spst1g01264 178 FunFam Ethylene-responsive transcription factor 2 70 129 - -
Spst1g01264 178 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Spst1g01264 178 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Spst1g01264 178 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Spst1g01264 178 PANTHER DNA-BINDING DOMAIN 49 156 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01264 Spst-Chr1 15226137 15226673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01264 68 131 AP2-EREBP Transcription Factor Family AT2G33710 70.312 3.79e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g01264 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01264 K09286 - pvu:PHAVU_008G046500g 228.409