Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01254 ATGGAGAGGGTTGCAGAGCCAAAGGTACTTCCTCGGTCCTTGCCCGTTTTGGTTGAAGTATCTCATGCACACAATGCTGCAATACGAGAAGCTGGCCAAAGACTAAATGGGCAGGATGTTTCGGGTGTGCGAGGGATTCCAGCAAGAGAAGGGACTCAGTTTTCAAAGTCACAAGACGGCCCTATGACACGCCTTGCCTCCATCAGAGAAGTGGCTCAGTTATCAAATGCAAGAATAGTTTTGGTAAGAGAGGATATGGGATTCGATACACGATCCTGTCAAGAGCCTCCCTCCCCTGTGCCTACAAGAACGTGGAAAGGAAAGGGCTCTTTACCAGAAGCTGTTGAACTTGTGTCTGATATTCAGCCATTGAAGGGTAGGAATGATTCTTTGGGGGAAACTGGTCCAAGTTCGTTTGCTGGTGCAAGTCATCCCCCAGAACCGGTTGATACTGATCTTATGAGAACGGTTTATGTACCAATAGGTCAAACCAAATCTGAGGCAGCATGCTTAATGAAGAGTGTGTCCTTGAAGGGTCCTTTCTTAGAAGATCTTTCAATTCGTGTTCCCACCAAGAAACCAAGTGTGGCTGTTGATTCTCCGGCAGAAAGCCTGGTTGATGAGTCAAATGAGATGGGTAATTTACCCTCGACACCTTCAGGTGCTCGTGCATCACAGAATACTGAGAACTCTCCACTTGCCCCAGATTCTGAGAAAGAATGTGTTTGGGATGCATCTTTGCCTCCAAGCGGTAATGTCAGTCCTCTTAGTAGTATTGATAGTACTAGCGTTGTCAGAACAATGAGCATCGTTAATAGTTGTGCAAGTACATACCGGAGTGATGCAGTCACTAGTGATGGGATGCTTAGTTTGGACAGGAATTGTGATAGCACTAAAGGAAGTGTAAGAGGGGATTCACTTGAGAGTGGAAAAACTAGTGCTAGTCGAGCAAGTGATAGCAGTGGCCTCAGTGATGACAGCAACTGGAGTAACATAACTGGTAGTGCCAATAAGCCACACAAAGGAAATGATCCTAGATGGAAGGCTATCCTTGCCATCCGAGCACGTGATGGAATTCTAGGCATGAGTCATTTTAGGTTACTCAAACGACTCGGTTGTGGTGATATTGGAAGTGTATATCTCTCAGAACTGAGTGCAACTCGATGCTTTTTTGCAATGAAAGTTATGGACAAGGCATCCTTAGCGAGCAGAAATAAGCTGACCAGGGCTCAGACAGAAAGAGAGATATTGCAGTTGCTGGACCATCCATTTCTGCCTACTTTGTATACACATTTCGAGACTGACAGATTCTGCTGTTTGGTAATGGAATACTGTCCAGGGGGTGATCTTCACACCTTAAGGCAACGACAACCTGGGAAACATTTCTCAGAGTATGCTGCACGCTTTTATGCTGCAGAGGTCCTGTTGGCACTTGAATATCTTCACATGCTTGGAGTGGTGTACCGAGACCTCAAACCTGAAAACGTACTGGTTCGAGATGATGGTCACATAATGCTCTCAGACTTCGATCTTTCTCTCAGATGTGCTGTTTCACCTACCCTAATCAGAAACATTGACGGGGATCCCTCCAAACGAGCCGGTGGGGCATTTTGTGTGCAGCCGGCTTGTATTGAGCCTTCATCAGTATGCATCCAGCCTTCATGTTTCATGCCTCGCCTCTTTGCTCAGAAAAATAAGAAGTCACGGAGGCCTAAAGCCGATCCTGGCCTCCCATCCAGCACACTTCCTGAGCTTGTTGCAGAACCAACAACTGCTCGGTCGATGTCTTTTGTTGGCACTCATGAATACCTTGCCCCTGAAATCATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAGCTATTATATGGTAAGACTCCTTTCAAAGGATCAGGAAACCGAGCTACCCTGTTCAATGTAGTAGGTCAGCAGCTCAGATTTCCTGAATCGCCGGCCACCAGTTATGCCAGCCGTGATCTCATCAGGGGCCTGCTGGTGAAGGAGCCGCAGCACCGGCTCGGGGTGAAGAGGGGTGCGACTGAGATCAAACAGCACCCATTCTTTGAAGGTGTGAACTGGGCTTTGATCAGGTGCAGTACGCCACCAGAAGTTCCAAGACCAGTTGAATGTGATGTAGCAGCAAAGTTTGAACCAGTTGATACAATCGGGGTTGGCATCAACAACAGTAGTAAGAGGATGGCAGGTAATAATGACATGAAGTCTGGGGGTAAATATCTAGACTTCGAGTTTTTTTAG 2283 0.4678 MERVAEPKVLPRSLPVLVEVSHAHNAAIREAGQRLNGQDVSGVRGIPAREGTQFSKSQDGPMTRLASIREVAQLSNARIVLVREDMGFDTRSCQEPPSPVPTRTWKGKGSLPEAVELVSDIQPLKGRNDSLGETGPSSFAGASHPPEPVDTDLMRTVYVPIGQTKSEAACLMKSVSLKGPFLEDLSIRVPTKKPSVAVDSPAESLVDESNEMGNLPSTPSGARASQNTENSPLAPDSEKECVWDASLPPSGNVSPLSSIDSTSVVRTMSIVNSCASTYRSDAVTSDGMLSLDRNCDSTKGSVRGDSLESGKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSATRCFFAMKVMDKASLASRNKLTRAQTEREILQLLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRNIDGDPSKRAGGAFCVQPACIEPSSVCIQPSCFMPRLFAQKNKKSRRPKADPGLPSSTLPELVAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVECDVAAKFEPVDTIGVGINNSSKRMAGNNDMKSGGKYLDFEFF 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01254 760 SUPERFAMILY Protein kinase-like (PK-like) 347 719 IPR011009 -
Spst1g01254 760 CDD STKc_phototropin_like 363 716 - -
Spst1g01254 760 MobiDBLite consensus disorder prediction 125 148 - -
Spst1g01254 760 MobiDBLite consensus disorder prediction 193 238 - -
Spst1g01254 760 SMART serkin_6 365 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01254 760 MobiDBLite consensus disorder prediction 210 234 - -
Spst1g01254 760 ProSiteProfiles Protein kinase domain profile. 365 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01254 760 FunFam serine/threonine-protein kinase D6PK-like 449 516 - -
Spst1g01254 760 Gene3D Transferase(Phosphotransferase) domain 1 449 715 - -
Spst1g01254 760 Pfam Protein kinase domain 366 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01254 760 Pfam Protein kinase domain 594 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01254 760 MobiDBLite consensus disorder prediction 289 342 - -
Spst1g01254 760 Gene3D Phosphorylase Kinase; domain 1 365 719 - -
Spst1g01254 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Spst1g01254 760 MobiDBLite consensus disorder prediction 290 338 - -
Spst1g01254 760 FunFam serine/threonine-protein kinase D6PK-like 592 715 - -
Spst1g01254 760 FunFam Serine/threonine-protein kinase D6PK-like 363 448 - -
Spst1g01254 760 PANTHER FLIPPASE KINASE 1-RELATED 140 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01254 Spst-Chr1 14962841 14966393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01254 1 760 AGC Kinase Gene Family AT2G44830 66.413 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Spst1g01254 Pkinase 8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01254 - - gmx:100818352 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00762 4 34537723 34548043 Spst1g01254 1 14962841 14966393 PCT