Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01241 ATGGTATCCATCAAGATTCTGGCCTTATGGCAGATTCTTTTCTCCTTTCTTTCTGTCTTTCTAACCCAATCTTCACTCCAGCTTGCTTGGTTTTCCAAAACAGTGATTTTGGCCTCTGCTGCCAGCACAGGAACAGTTGGTGATCAAGCTGCAGCTGATAACAGTGAGGCAAATGCACTGTTGAAGTGGAAACACAGCTTTGATAATTACAGCCAAGATCTCTTGTCAACTTGGACCGGTTCTGCTTCATGCCAATGGCAAGGAATTCAGTGTGATAAATCCATGTTTGTCTCCAGCATAAATCTTGCAAATTATGGACTTATAGGTACACTTTCCACCCTCAACTTCTCCACTTTTCCCAACCTCCTCATCCTAAACATCTTTAACAACTCCTTTTATGGAACCATTCCCCCACAAATTGGTAACATGTCCAAAGTAAATGTTTTGAATCTTTCAACAAATTATTTCAACGGTTCAATCCCTCAAGAAATGTGGAGACTAAGAAGTTTACAAGGCCTTGATCTTTACCAATGTCAACTAAATGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTAGATTTAGGTGTGAACAATTTTTCTGGCCACATTCCACAAGAGATTGAAAAGTTGTCCAAGTTAGAGTATCTAGCTATTAAACATAATGCTCTTTCTGGTTCCATTCCTCCAGAAATTTCAATGTTGCAAAACCTCAGGAAAATTGATTTGTCAAGAAACTCGCTCTCTGGTGCTATCCCTGAAACAATAGGCAACCTTAGTAATTTAAATGAACTTCTCCTCTCTAATAACTCTCTTCTATCTGGGCCAATCCCCTCCTCCTTGTGGACCATGTCAAACTTGACCTTGCTTTTTCTGGATAAGAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGCCAATTTAGTGACTCTTGGACTTGATTACAACCACCTTTCCGGACCTATTCCTTCCACAATTGGAAACTTGACCAAGCTCACAGAGTTGTATTTACGCTTTAACAATCTTTCTGGATCAATTCCTCCCTCTATTGGAAACTTGATCAATTTGAAAATACTTAGTCTCCAAAGAAACAATCTCTCCGGAAAAATTCCTGCCACCATTGGAAATTTGATAAACCTCACCATTTTAGAAGTGTCCTTCAACAAGCTTAATGGCAGCGTTTACCAAGTCCTGAATAACATCCGCAACTGGACTTTCTTGTTACTAGCTGAGAATGATTTCACAGGCCACCTACCACCTCAAATTTGCTCTGCTGGGTCCCTAAGATTCTTTAGTGCTCATAGCAACCGTTTCAGCGGTCCAGTGGCAATAAGCTTGAAGAACTGTCCTAGTATTACTAGACTCAGGCTAGAAAGAAACCAATTGGAAGGTGATATAGCACAAGGTTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAATAAGTTGTATGGCCAAATTTCACCGAACTGGGGAAAGTGTCCGAATCTTCTTACCTTGAGGATGTCCAACAATAACATTTCTGGTGGTATACCAGTAGAACTTGTTGAGGCAACCAACCTAGGAGAGCTTCATCTTTCTTCTAACCACTTGAATGGAAAGATTCCAAAGGAATTAGGGAATATAAAATCGTTAATTGAACTCAAGATTAGCAACAACCATCTTTCTGGAAACATTCCTAAAGAAATCGGATCACTGCAAATTCTTGAAGAATTGGATCTTGGAGATAACCAGTTGAGTGGCACAATACCAATAGAAGTTGTGGAATTGCCAAAGTTACGAAACTTGACATTGAGCAATAATAAAATAAACGGAAACATTCCGTTGGAGTTTCGCCAATTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATTTGTTGAGTGGAACCATACCAAAACAGCTTGGAGAGGTGGGGAAACTGCAATGGTTGAATCTGTCTCACAATAATCTTTCTGGAAGCATTCCATCCAGTTTCGATGGCATTTCAAGTTTGACTTCGATCAACATATCCTACAACCAGTTAGAAGGGCCACTTCCAGAAAATCGAGCCTTTCTTAATGCTTCAATTGAATCATTAAAAAATAACAGCGGCTTATGTGGCAACGTCACTGGCTTAATGCTTTGCCCAACCAACCACACTCAGAAGAGGCAAAAGGGCATTCAACTAGCACTATTCATTATCTTGGGTGCTCTTGTGCTAGTATTATGCGGGGTGTCAGTTTCAATGTATATTCTCTGTCGAAAAGCAAGAAAGAAAGATAACCATGCTAAAGAAAAAGGACAGTCAGAAAATGCACTGTTTGAAGAATTGTTTTCCATATGGAGTCATGGTGGAAAACTTATGTTTGAAAATATCATTGAAGCTACAGACAATTTCAACGACAAATATCTCATTGGACTTGGAGGGCAAGGATCTGTTTACAAAGCTGAGATGCCTACAGGCCAGGTTTTTGCGGTGAAGAAACTTCATTTGGATACAGATGGAGAGAAACCCAATTTTAAAGCTTTTGAAAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAACATTGTAAAGCTCTGTGGATTTTGTTCACATTCACGGTTCTCATTTTTGGTTTACAATTTCTTGGAAGGGGGTAGCTTGGATCAAATTCTAAGCAATGAGAAAAAAGCAGCTGCATTTGACTGGGAAATGAGGATGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTACATGCATCATGATTGCTCACCTCCAATAATTCATCGTGACATATCCAGCAAGAATATTCTTTTAGATTCACAATATGAAGCTCATGTCTCTGATTTTGGGACAGCTAGGATTCTGAAGCCTGGTTCACCCACTTGGACCACGTTTGCAGGCACCTTTGGGTACGCAGCTCCAGGTAGGATCCCTTTTCCTGATATTTAG 2952 0.398 MVSIKILALWQILFSFLSVFLTQSSLQLAWFSKTVILASAASTGTVGDQAAADNSEANALLKWKHSFDNYSQDLLSTWTGSASCQWQGIQCDKSMFVSSINLANYGLIGTLSTLNFSTFPNLLILNIFNNSFYGTIPPQIGNMSKVNVLNLSTNYFNGSIPQEMWRLRSLQGLDLYQCQLNGEIPNSIANLSNLSYLDLGVNNFSGHIPQEIEKLSKLEYLAIKHNALSGSIPPEISMLQNLRKIDLSRNSLSGAIPETIGNLSNLNELLLSNNSLLSGPIPSSLWTMSNLTLLFLDKNNLSGSIPASIENLANLVTLGLDYNHLSGPIPSTIGNLTKLTELYLRFNNLSGSIPPSIGNLINLKILSLQRNNLSGKIPATIGNLINLTILEVSFNKLNGSVYQVLNNIRNWTFLLLAENDFTGHLPPQICSAGSLRFFSAHSNRFSGPVAISLKNCPSITRLRLERNQLEGDIAQGFGVYPNLEYIDLSDNKLYGQISPNWGKCPNLLTLRMSNNNISGGIPVELVEATNLGELHLSSNHLNGKIPKELGNIKSLIELKISNNHLSGNIPKEIGSLQILEELDLGDNQLSGTIPIEVVELPKLRNLTLSNNKINGNIPLEFRQFQPLEYLDLSGNLLSGTIPKQLGEVGKLQWLNLSHNNLSGSIPSSFDGISSLTSINISYNQLEGPLPENRAFLNASIESLKNNSGLCGNVTGLMLCPTNHTQKRQKGIQLALFIILGALVLVLCGVSVSMYILCRKARKKDNHAKEKGQSENALFEELFSIWSHGGKLMFENIIEATDNFNDKYLIGLGGQGSVYKAEMPTGQVFAVKKLHLDTDGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHSRFSFLVYNFLEGGSLDQILSNEKKAAAFDWEMRMNVVKGVANALSYMHHDCSPPIIHRDISSKNILLDSQYEAHVSDFGTARILKPGSPTWTTFAGTFGYAAPGRIPFPDI 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01241 983 Gene3D Ribonuclease Inhibitor 210 303 IPR032675 -
Spst1g01241 983 Gene3D Ribonuclease Inhibitor 406 495 IPR032675 -
Spst1g01241 983 Gene3D Ribonuclease Inhibitor 596 718 IPR032675 -
Spst1g01241 983 Gene3D Ribonuclease Inhibitor 496 595 IPR032675 -
Spst1g01241 983 Gene3D Ribonuclease Inhibitor 304 405 IPR032675 -
Spst1g01241 983 Gene3D Ribonuclease Inhibitor 52 209 IPR032675 -
Spst1g01241 983 Pfam Protein kinase domain 804 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01241 983 FunFam Os07g0541700 protein 882 967 - -
Spst1g01241 983 PANTHER LEUCINE RICH REPEAT KINASE 2 332 975 - -
Spst1g01241 983 SMART LRR_sd22_2 288 314 - -
Spst1g01241 983 SMART LRR_sd22_2 624 658 - -
Spst1g01241 983 SMART LRR_sd22_2 576 597 - -
Spst1g01241 983 SMART LRR_sd22_2 384 410 - -
Spst1g01241 983 SMART LRR_sd22_2 239 265 - -
Spst1g01241 983 SMART LRR_sd22_2 336 362 - -
Spst1g01241 983 SMART LRR_sd22_2 191 217 - -
Spst1g01241 983 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 408 723 - -
Spst1g01241 983 FunFam MDIS1-interacting receptor like kinase 2 isoform A 53 208 - -
Spst1g01241 983 Pfam Leucine rich repeat 241 301 IPR001611 GO:0005515
Spst1g01241 983 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Spst1g01241 983 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Spst1g01241 983 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Spst1g01241 983 Pfam Leucine rich repeat 627 685 IPR001611 GO:0005515
Spst1g01241 983 FunFam Leucine-rich repeat receptor protein kinase MSP1 766 881 - -
Spst1g01241 983 Gene3D Transferase(Phosphotransferase) domain 1 882 978 - -
Spst1g01241 983 Pfam Leucine rich repeat N-terminal domain 54 92 IPR013210 -
Spst1g01241 983 SUPERFAMILY Protein kinase-like (PK-like) 789 975 IPR011009 -
Spst1g01241 983 Gene3D Phosphorylase Kinase; domain 1 760 881 - -
Spst1g01241 983 SUPERFAMILY RNI-like 296 692 - -
Spst1g01241 983 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 335 404 - -
Spst1g01241 983 ProSitePatterns Tyrosine protein kinases specific active-site signature. 927 939 IPR008266 GO:0004672|GO:0006468
Spst1g01241 983 SUPERFAMILY L domain-like 84 399 - -
Spst1g01241 983 SMART LRR_typ_2 600 623 IPR003591 -
Spst1g01241 983 SMART LRR_typ_2 288 312 IPR003591 -
Spst1g01241 983 SMART LRR_typ_2 239 263 IPR003591 -
Spst1g01241 983 SMART LRR_typ_2 191 215 IPR003591 -
Spst1g01241 983 SMART LRR_typ_2 360 384 IPR003591 -
Spst1g01241 983 SMART LRR_typ_2 648 671 IPR003591 -
Spst1g01241 983 SMART LRR_typ_2 336 359 IPR003591 -
Spst1g01241 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 234 329 - -
Spst1g01241 983 ProSiteProfiles Protein kinase domain profile. 803 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01241 Spst-Chr1 14695810 14698761 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01241 26 981 Receptor kinase-like Gene Family AT4G08850 43.505 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g01241 Pkinase 4.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01241 - - vra:106759489 1582.39