Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01238 ATGGTATGCACCTTTGAAAGGGAAAAGTTCATGCTGGTTCTATTTCTTTGTGTCTTTCTAACACTCTCGGGGCCTCAAGCTGCAGCTGAAGACAGTGAAGCAAATGCTTTGTTGAAGTGGAAACACAGCTTTGACAACCACAGCCAAGCTCTCTTGTCAACATGGAGAGGTAATAATCCCTGCACATGGGAAGGAATTCAGTGTGACAATTCTAAGTCTGTATCCAGCATAAATCTTCCAACTTATGGACTTAAAGGTACACTTCACACTCTCAGCTTCTCCATTTTCCCTAACCTTCTCAGCCTTAATATCTATGAAAACTCCTTTCATGGGACCATTCCCCGACAAGTTGGTAATATAACCAGAGTGAATGTTTTAAATTTTTCTTCAAATTCTTTCCATGGTTCCATCCCTCAAGAAATGTGGACACTAGGGAGTTTACATAAACTTGATCTTTCCCTGTGTCAACTAAGCGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATTTCTAGATTTAGGTGGCAACAATTTTTCTTGCCGCATTCCTCCAGGGATTGGAAAGTTGCACAAGTTGGAGTATCTAGGTATTGAAGATAGTAAGCTTTTTGGTTCTATTCCTCAAGAAATTGGAATGTTGACAAACCTTGAACTTATTGATTTGTCAAGAAACTCTCTTTCTGGTACTATCCCTGAAACGATAGGTAACTTGAGCAATTTAAATCAACTTTACCTTTCTCGTAACTCCCTACTATCTGGGCCAATCCCATCCTCCTTATGGAACATGTCTAACTTGGCCGTGCTCTTCCTTGAAATCAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAACCTGGCCAATTTAAAGCAACTTGGACTCGATAACAATAAACTTTCCGGACCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCACCATGTTGTATTTAGGCTTTAATAATCTTTCTGGATCAATTCCTCCCTCTATAGGTAATTTGATCAATTTAGATGCCCTTAGTCTCCAAGCAAACAATCTCTCTGGATCAATTCCTGACGCAATTGGAAATTTGAAAATGCTCACCATTTTGGAATTGTCCACCAACAAGCTTAATGGCAGCATTCCACAAGGCTTGACTGACATTACCAACTGGTATTCCTTGTTACTAGCTGAGAATGATTTCACGGGCCATTTACCTCCTCAAATTTGCTCTTCTGGATCACTAGTGTTCTTTAATGCTTTTGGCAACCGTTTCACGGGTCCAGTGCCAAGAAGCTTAAAGAATTGCTCTACTATTGCTAGACTCAGGATGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTGTATCCTAATTTGAAGTACATTGATTTGAGTGACAATAAATTTCAGGGTCACATTTCACCAAACTGGGGAAAGTGCCACAAACTTGGTACCTTCAAGATATCCAACAATAATATTTCCGGTGGTATACCAATAGAGCTTGTTGAGGCAATCAACCTCGGTGTGCTCCACCTTTCTTCTAACCACCTGGGTGGAAAGCTGCCAAAGGAATTAGGGAATATGAAATCGTTATTTCAAGTCAAGATTAGCAATAATCATCTTTCCGGAAACATTCCAACAGAATTTGGATTACTGCAAAATCTTGAAGATTTGGATCTGGGAGATAACGAATTGACTGGCACAATACCAGTAGAAGTTGTGAAATTGCACAAGTTACGGAATTTGAATTTTAGCAAAAACAAAATTTACGGAAGCATTCCCTCTCAGTTCAGTCAATCCTTAGTATCTCTTGATCTCAGTGCCAATTTGTTGAGTGGAACAATACCAACAAATCTTGGAGAGTTGCAAAGCTTGTTCATGTTGAATCTCTCACATAATAGTCTTTCTGGCACCATTCCTTCAACTTTTAACAGAATGTTGAGTATTTTCAACCTATCAGACAACCAATTAGAAGGGCCAATTCCAAATATTCCACTTTTTCTTGATGCTCCCATTGAATCACTGAAAAATAATAAAGGCTTGTGTGGTAACGTCACGGGTTTGGTTCTTTGTCCAATCAACCAAAATCGAAAGAGAAACAAAGTCATCCTACTTAGTTTAGGAGCTTTAGTACTAGTGTTGTGTGGGTTGGCACTTTCAATGTATACTTTTTGTCGTGGTAAAAGAAAGGCAAAAAGTCATTCTAATTCTGAAGAAGCACCAAGAGAAGTACTCTTTTCCATATGGAGCTATGATGGGAAAATCATGTTTGACAGTATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTTATTGGAGCAGGAAGTCAAGGATATGTTTACAAGGTGGTGTTGCCGTCAGGTTTGGTTATTGCTGTGAAGAAACTTCATTCGGTGATAGATGAGAAAATGTCAGATTTTAGTTTGAAGGCTTTTACAAGTGAGATTCAAGCCTTGACAGAAATCAAACATCGGAATATTATAAAGTTGCGTGGATTTTGCTCACATTCTCAGGTCTCATTTTTGGTTTATCAGTTCATGGAAGGGGGTAGCCTGGATCAATTGCTGAACAGAGATACACAAGCAACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTATTTGCACCATGATTGCTCACCTCCTATTGTTCATCGGGACATATCAAGTAAAAATGTTCTCTTGGATCTTGGGTATGAAGCTCATATCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCAAGCTCAGATAGATGGACACAATTCGCAGGCACCTTTGGGTATGCTGCTCCAGAGTTGGCCCAGACAATGGAAGTAAATGAGAAATGTGATGTTTATAGCTTTGGAATACTTGCTTTGGAAATCATTATGGGAAAACATCCAAGAGATCTCATTTCTCAACTTATGTCACAATCTATGACACCAATTGTTAATGACTTGCTATTGGCTGATGTTTTAGATCAACGGCCTCCTCAACCTAGAAAACCAATTGATGGAGAGGTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAATGAAAATCCACGTTCTCGCCCAACCATGGATCGAGTATCCAAGGCATTGGGAACAGGAAAATCACCTTTGGCTCACCAATTTCCAATGACCAGACTGGGACAACTCCGCTGA 3183 0.3962 MVCTFEREKFMLVLFLCVFLTLSGPQAAAEDSEANALLKWKHSFDNHSQALLSTWRGNNPCTWEGIQCDNSKSVSSINLPTYGLKGTLHTLSFSIFPNLLSLNIYENSFHGTIPRQVGNITRVNVLNFSSNSFHGSIPQEMWTLGSLHKLDLSLCQLSGEIPNSIANLSNLSFLDLGGNNFSCRIPPGIGKLHKLEYLGIEDSKLFGSIPQEIGMLTNLELIDLSRNSLSGTIPETIGNLSNLNQLYLSRNSLLSGPIPSSLWNMSNLAVLFLEINNLSGSIPASIENLANLKQLGLDNNKLSGPIPSTIGNLTKLTMLYLGFNNLSGSIPPSIGNLINLDALSLQANNLSGSIPDAIGNLKMLTILELSTNKLNGSIPQGLTDITNWYSLLLAENDFTGHLPPQICSSGSLVFFNAFGNRFTGPVPRSLKNCSTIARLRMEGNQLEGDIAQDFGVYPNLKYIDLSDNKFQGHISPNWGKCHKLGTFKISNNNISGGIPIELVEAINLGVLHLSSNHLGGKLPKELGNMKSLFQVKISNNHLSGNIPTEFGLLQNLEDLDLGDNELTGTIPVEVVKLHKLRNLNFSKNKIYGSIPSQFSQSLVSLDLSANLLSGTIPTNLGELQSLFMLNLSHNSLSGTIPSTFNRMLSIFNLSDNQLEGPIPNIPLFLDAPIESLKNNKGLCGNVTGLVLCPINQNRKRNKVILLSLGALVLVLCGLALSMYTFCRGKRKAKSHSNSEEAPREVLFSIWSYDGKIMFDSIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVIAVKKLHSVIDEKMSDFSLKAFTSEIQALTEIKHRNIIKLRGFCSHSQVSFLVYQFMEGGSLDQLLNRDTQATAFDWEKRVNVVKGVANALSYLHHDCSPPIVHRDISSKNVLLDLGYEAHISDFGTAKFLKPSSDRWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGILALEIIMGKHPRDLISQLMSQSMTPIVNDLLLADVLDQRPPQPRKPIDGEVILIVRLALACLNENPRSRPTMDRVSKALGTGKSPLAHQFPMTRLGQLR 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01238 1060 SUPERFAMILY RNI-like 342 660 - -
Spst1g01238 1060 FunFam Leucine-rich repeat receptor protein kinase EMS1 284 381 - -
Spst1g01238 1060 MobiDBLite consensus disorder prediction 1029 1048 - -
Spst1g01238 1060 Gene3D Transferase(Phosphotransferase) domain 1 849 1050 - -
Spst1g01238 1060 Gene3D Ribonuclease Inhibitor 186 280 IPR032675 -
Spst1g01238 1060 Gene3D Ribonuclease Inhibitor 281 384 IPR032675 -
Spst1g01238 1060 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Spst1g01238 1060 FunFam MDIS1-interacting receptor like kinase 2 849 1046 - -
Spst1g01238 1060 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Spst1g01238 1060 Pfam Leucine rich repeat 266 326 IPR001611 GO:0005515
Spst1g01238 1060 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 310 1040 - -
Spst1g01238 1060 FunFam MDIS1-interacting receptor like kinase 2 isoform A 186 283 - -
Spst1g01238 1060 SUPERFAMILY Protein kinase-like (PK-like) 750 1039 IPR011009 -
Spst1g01238 1060 SMART LRR_sd22_2 216 242 - -
Spst1g01238 1060 SMART LRR_sd22_2 553 574 - -
Spst1g01238 1060 SMART LRR_sd22_2 313 339 - -
Spst1g01238 1060 SMART LRR_sd22_2 577 607 - -
Spst1g01238 1060 SMART LRR_sd22_2 361 384 - -
Spst1g01238 1060 SMART LRR_sd22_2 265 291 - -
Spst1g01238 1060 Gene3D Ribonuclease Inhibitor 385 692 IPR032675 -
Spst1g01238 1060 FunFam Leucine-rich repeat receptor protein kinase MSP1 730 848 - -
Spst1g01238 1060 SUPERFAMILY RNI-like 76 399 - -
Spst1g01238 1060 ProSiteProfiles Protein kinase domain profile. 768 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01238 1060 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 385 696 - -
Spst1g01238 1060 SMART LRR_typ_2 553 577 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 313 337 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 623 646 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 361 385 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 168 192 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 289 312 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 216 239 IPR003591 -
Spst1g01238 1060 SMART LRR_typ_2 240 265 IPR003591 -
Spst1g01238 1060 FunFam MDIS1-interacting receptor like kinase 2 isoform A 30 185 - -
Spst1g01238 1060 Pfam Protein kinase domain 770 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01238 1060 Gene3D Phosphorylase Kinase; domain 1 728 848 - -
Spst1g01238 1060 ProSitePatterns Tyrosine protein kinases specific active-site signature. 894 906 IPR008266 GO:0004672|GO:0006468
Spst1g01238 1060 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01238 Spst-Chr1 14596929 14600371 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01238 1 942 Receptor kinase-like Gene Family AT4G08850 43.288 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g01238 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01238 - - gmx:100812486 1467.21