Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01224 ATGCCTCCGAGAATAGTGAAGAGAGGCGCTGCGGCGAAGAGGGCATCGAGAGGATCCTCAAAACCCGCACCTGAGAATCATATGCATGAGCATGAAACTGTGGAAGTGGGGGAGAAAAATCATATAGAAAACTCGGCTGTTGATGTTGGGGTGGAAGAGAAGCAAGTTGATGTGGACCAAGACCCTGTGAAAGTTCCAAACGGGTCGGCTAAGGTCGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAGCACTTAGATTTAGAGGATAATTATCCCGAGTATGAACCAGAGGAGTATAGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGAGGAGGGAGATGAAGTAGAGGAAGAACCTGAAGAGATTATTGGTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGAGCATGCTGTTAAGGAGCATGAGCATGAACAGGTACCCAATGCGGAGGAAGAGGAACATCGTGAGGTTGTAAAGGAGAGGCAAAAGCGGAAGGAATTTGAAGTATTTGTGGGTGGTCTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGTCTAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCTAAACGTGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGTAAACAATGTGGGGTTACTCCAAGTCAGGACAGTGACACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTGAAACACTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGAATGAATCGAGGATTTGCATTTTTGGAGTTTTCATCACGTTCAGATGCTAAGGAAGCCTATAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTAATTGATCTGGGTGATGAAATTATGACACAGGTTAAAACTGTATTTATTGATTCACTACCTCCATCATGGGATGAAGATTATGTCCAGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTAGCTAGGAACATGCCAGCTGCACGGAGGAAGAACTATGGATTTGTCACATTTAGTACACATGCTGCGGCTGTGGAATGTGCCAATAGCATTACTGGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTCGGGCTAGATTGTCACGGCCTCTTTCAAAACCTTTACAAAGAGGCCGTGGGAAACATATTAATCATGGTGATTTTCGTTCTAGCCGCATCTCTGGAAGATTGGCAAGGCCTTCATGGAGTCGACCTGCACCACGTATGCCTCCTGCCCGCGTGGTGAGAGGAGTTGGAAGTCGTGCTCCACCTGTTAGACCTGTTAGTATGAGAAGTAGACGCCCACGCCCTGTCACATCTATGCTAGTAAGAGCCAGGCCAGTTGCTCCTTCAGCTAGAACCTATGACAGGAGATTGACTGCTCCCGCATATTCAAAAAGTGGCATGAAAAGAGACTACAGTCAACGTGAAGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGCTCTAGGGTTGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTATGTTGAGCTACATAGAAGTTCGTCACGTGCTGCACCAAAGAGGGGTTATGTTGATGATGGCTATGACCAAAGATTTGAGAGGCCTCCTCCTCCTCCCCATCTGAGTTATCGTGAAGGACACCCCCGTGATTATGACTCTATATCTGGCTCAAAACGTCCTTATTCTGCTATTGATGATGTTCCTCCTCGGTATGAAACTGGTACCCGCCAATCAAGATCTCGATTAGATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGCCTTGGATATAGTGGCAGTAGAAATTCCATTTCTAATCAAGAATTACATGGGACATATGGCAGTCGACAAGGCGGGAGTTATGCTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATATACACATCAAGTTATGGTGGTGATTATGTCTCGCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTATTCTGGTAGAGGTATGGGTGGTGGTAGCAGCAGCTATATGGGTGGTGGTGGATCTGATTCTTATTATTGA 2337 0.4424 MPPRIVKRGAAAKRASRGSSKPAPENHMHEHETVEVGEKNHIENSAVDVGVEEKQVDVDQDPVKVPNGSAKVENNEEEVKESIDEYEKDEHLDLEDNYPEYEPEEYSGVDYDEKEIEQDEGQEEGDEVEEEPEEIIGEEEGDTGDEEVEYVYEEVEDDDDEHAVKEHEHEQVPNAEEEEHREVVKERQKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQSKRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSLIDLGDEIMTQVKTVFIDSLPPSWDEDYVQDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECANSITGAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHINHGDFRSSRISGRLARPSWSRPAPRMPPARVVRGVGSRAPPVRPVSMRSRRPRPVTSMLVRARPVAPSARTYDRRLTAPAYSKSGMKRDYSQREDLPPPRSRVAADYGSRVASQRHTSYRDYPARGSDYVELHRSSSRAAPKRGYVDDGYDQRFERPPPPPHLSYREGHPRDYDSISGSKRPYSAIDDVPPRYETGTRQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISNQELHGTYGSRQGGSYAGGSFGGSDGGIYTSSYGGDYVSRGSDVGGRSYSSMYSGRGMGGGSSSYMGGGGSDSYY 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01224 778 MobiDBLite consensus disorder prediction 591 641 - -
Spst1g01224 778 Gene3D - 362 482 IPR012677 -
Spst1g01224 778 MobiDBLite consensus disorder prediction 96 161 - -
Spst1g01224 778 SUPERFAMILY RNA-binding domain, RBD 194 337 IPR035979 GO:0003676
Spst1g01224 778 CDD RRM_SF 372 446 - -
Spst1g01224 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Spst1g01224 778 MobiDBLite consensus disorder prediction 23 40 - -
Spst1g01224 778 CDD RRM_SF 195 266 - -
Spst1g01224 778 MobiDBLite consensus disorder prediction 753 778 - -
Spst1g01224 778 Coils Coil 111 131 - -
Spst1g01224 778 MobiDBLite consensus disorder prediction 53 181 - -
Spst1g01224 778 FunFam RNA recognition water-stress protein1 360 485 - -
Spst1g01224 778 MobiDBLite consensus disorder prediction 478 674 - -
Spst1g01224 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 433 IPR000504 GO:0003723
Spst1g01224 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 341 IPR000504 GO:0003723
Spst1g01224 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Spst1g01224 778 FunFam Heterogeneous nuclear ribonucleoprotein Q 274 356 - -
Spst1g01224 778 Gene3D - 152 273 IPR012677 -
Spst1g01224 778 MobiDBLite consensus disorder prediction 162 181 - -
Spst1g01224 778 Gene3D - 274 356 IPR012677 -
Spst1g01224 778 Coils Coil 69 92 - -
Spst1g01224 778 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 128 273 - -
Spst1g01224 778 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 33 778 - -
Spst1g01224 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 452 IPR000504 GO:0003723
Spst1g01224 778 SUPERFAMILY RNA-binding domain, RBD 365 473 IPR035979 GO:0003676
Spst1g01224 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 357 IPR000504 GO:0003723
Spst1g01224 778 SMART rrm1_1 194 267 IPR000504 GO:0003723
Spst1g01224 778 SMART rrm1_1 371 446 IPR000504 GO:0003723
Spst1g01224 778 SMART rrm1_1 274 353 IPR000504 GO:0003723
Spst1g01224 778 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01224 Spst-Chr1 14494099 14498542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01224 195 456 Eukaryotic Initiation Factors Gene Family AT1G49760 24.749 1.88e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01224 - - gmx:100811387 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01234 4 47155139 47159770 Spst1g01224 1 14494099 14498542 PCT