Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g01224 | ATGCCTCCGAGAATAGTGAAGAGAGGCGCTGCGGCGAAGAGGGCATCGAGAGGATCCTCAAAACCCGCACCTGAGAATCATATGCATGAGCATGAAACTGTGGAAGTGGGGGAGAAAAATCATATAGAAAACTCGGCTGTTGATGTTGGGGTGGAAGAGAAGCAAGTTGATGTGGACCAAGACCCTGTGAAAGTTCCAAACGGGTCGGCTAAGGTCGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAGCACTTAGATTTAGAGGATAATTATCCCGAGTATGAACCAGAGGAGTATAGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGAGGAGGGAGATGAAGTAGAGGAAGAACCTGAAGAGATTATTGGTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGAGCATGCTGTTAAGGAGCATGAGCATGAACAGGTACCCAATGCGGAGGAAGAGGAACATCGTGAGGTTGTAAAGGAGAGGCAAAAGCGGAAGGAATTTGAAGTATTTGTGGGTGGTCTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGTCTAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCTAAACGTGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGTAAACAATGTGGGGTTACTCCAAGTCAGGACAGTGACACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTGAAACACTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGAATGAATCGAGGATTTGCATTTTTGGAGTTTTCATCACGTTCAGATGCTAAGGAAGCCTATAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTAATTGATCTGGGTGATGAAATTATGACACAGGTTAAAACTGTATTTATTGATTCACTACCTCCATCATGGGATGAAGATTATGTCCAGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTAGCTAGGAACATGCCAGCTGCACGGAGGAAGAACTATGGATTTGTCACATTTAGTACACATGCTGCGGCTGTGGAATGTGCCAATAGCATTACTGGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTCGGGCTAGATTGTCACGGCCTCTTTCAAAACCTTTACAAAGAGGCCGTGGGAAACATATTAATCATGGTGATTTTCGTTCTAGCCGCATCTCTGGAAGATTGGCAAGGCCTTCATGGAGTCGACCTGCACCACGTATGCCTCCTGCCCGCGTGGTGAGAGGAGTTGGAAGTCGTGCTCCACCTGTTAGACCTGTTAGTATGAGAAGTAGACGCCCACGCCCTGTCACATCTATGCTAGTAAGAGCCAGGCCAGTTGCTCCTTCAGCTAGAACCTATGACAGGAGATTGACTGCTCCCGCATATTCAAAAAGTGGCATGAAAAGAGACTACAGTCAACGTGAAGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGCTCTAGGGTTGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTATGTTGAGCTACATAGAAGTTCGTCACGTGCTGCACCAAAGAGGGGTTATGTTGATGATGGCTATGACCAAAGATTTGAGAGGCCTCCTCCTCCTCCCCATCTGAGTTATCGTGAAGGACACCCCCGTGATTATGACTCTATATCTGGCTCAAAACGTCCTTATTCTGCTATTGATGATGTTCCTCCTCGGTATGAAACTGGTACCCGCCAATCAAGATCTCGATTAGATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGCCTTGGATATAGTGGCAGTAGAAATTCCATTTCTAATCAAGAATTACATGGGACATATGGCAGTCGACAAGGCGGGAGTTATGCTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATATACACATCAAGTTATGGTGGTGATTATGTCTCGCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTATTCTGGTAGAGGTATGGGTGGTGGTAGCAGCAGCTATATGGGTGGTGGTGGATCTGATTCTTATTATTGA | 2337 | 0.4424 | MPPRIVKRGAAAKRASRGSSKPAPENHMHEHETVEVGEKNHIENSAVDVGVEEKQVDVDQDPVKVPNGSAKVENNEEEVKESIDEYEKDEHLDLEDNYPEYEPEEYSGVDYDEKEIEQDEGQEEGDEVEEEPEEIIGEEEGDTGDEEVEYVYEEVEDDDDEHAVKEHEHEQVPNAEEEEHREVVKERQKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQSKRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSLIDLGDEIMTQVKTVFIDSLPPSWDEDYVQDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECANSITGAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHINHGDFRSSRISGRLARPSWSRPAPRMPPARVVRGVGSRAPPVRPVSMRSRRPRPVTSMLVRARPVAPSARTYDRRLTAPAYSKSGMKRDYSQREDLPPPRSRVAADYGSRVASQRHTSYRDYPARGSDYVELHRSSSRAAPKRGYVDDGYDQRFERPPPPPHLSYREGHPRDYDSISGSKRPYSAIDDVPPRYETGTRQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISNQELHGTYGSRQGGSYAGGSFGGSDGGIYTSSYGGDYVSRGSDVGGRSYSSMYSGRGMGGGSSSYMGGGGSDSYY | 778 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 591 | 641 | - | - | |
Spst1g01224 | 778 | Gene3D | - | 362 | 482 | IPR012677 | - | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 96 | 161 | - | - | |
Spst1g01224 | 778 | SUPERFAMILY | RNA-binding domain, RBD | 194 | 337 | IPR035979 | GO:0003676 | |
Spst1g01224 | 778 | CDD | RRM_SF | 372 | 446 | - | - | |
Spst1g01224 | 778 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 193 | 271 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 23 | 40 | - | - | |
Spst1g01224 | 778 | CDD | RRM_SF | 195 | 266 | - | - | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 753 | 778 | - | - | |
Spst1g01224 | 778 | Coils | Coil | 111 | 131 | - | - | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 53 | 181 | - | - | |
Spst1g01224 | 778 | FunFam | RNA recognition water-stress protein1 | 360 | 485 | - | - | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 478 | 674 | - | - | |
Spst1g01224 | 778 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 372 | 433 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 275 | 341 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 195 | 263 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | FunFam | Heterogeneous nuclear ribonucleoprotein Q | 274 | 356 | - | - | |
Spst1g01224 | 778 | Gene3D | - | 152 | 273 | IPR012677 | - | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 162 | 181 | - | - | |
Spst1g01224 | 778 | Gene3D | - | 274 | 356 | IPR012677 | - | |
Spst1g01224 | 778 | Coils | Coil | 69 | 92 | - | - | |
Spst1g01224 | 778 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 128 | 273 | - | - | |
Spst1g01224 | 778 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 33 | 778 | - | - | |
Spst1g01224 | 778 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 370 | 452 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | SUPERFAMILY | RNA-binding domain, RBD | 365 | 473 | IPR035979 | GO:0003676 | |
Spst1g01224 | 778 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 273 | 357 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | SMART | rrm1_1 | 194 | 267 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | SMART | rrm1_1 | 371 | 446 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | SMART | rrm1_1 | 274 | 353 | IPR000504 | GO:0003723 | |
Spst1g01224 | 778 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g01224 | Spst-Chr1 | 14494099 | 14498542 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g01224 | 195 | 456 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 24.749 | 1.88e-15 | 78.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g01224 | - | - | gmx:100811387 | 1082.4 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst4g01234 | 4 | 47155139 | 47159770 | Spst1g01224 | 1 | 14494099 | 14498542 | PCT |