Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01221 ATGGCCTCCCCCTCTTCCCCCACCGACTCCAATCCTCCCTCCGCCGTTCCTCTCCCCCTTCCCGCCCCACCCTCCACCTCATCCCGCCGTCTCCCCCCGCCCTGCTGGACCCCGGAGGAAACCGCTGCCCTCATCGACGCATACCGTGACAAGTGGTACTCCCTCGGCCGCACCAATCTCAAAGCCACCCACTGGCAAGAGGTCGCCGATGCCGTCACCGCCCAATGCCCCAACGCCGCCCCCACCGCCAAAACCGCGGTCCAGTGCCGCCACAAAATGGAAAAACTCCGCAAACGCTACCGCACCGAAATCCAACGCCTCCGCTCCCTCCCCCTCCCTCGCCTCATTAACACCACCACCGCTTCACCTTCTTCCTGGGTCCACTTCAAATCCATGGACTCCATGGAAAAAGGCCCCAACAAACCCCACATCGATACAACCACCGCCACCGCCACCAACCCCAACACCCCCACCAACAATCTCAATTTCCCCGACGACGAAAACGACGACGACGATCTGTACGAGGAATTCAAGAACGCCCCCGGATCCAACACGCGCAGCCTCAACAAACTCTACAAGAACGGCTTCGGACCCGGCTCGGCGTCCGGGTTCAGGATCCGGATCCCGGCGGGGGTGCCAAACCACGCGCCGTCCAAGTTCTTCAACGCGCCTCCCCCCGGGATGGGGCCACGCAACGGCGCCAAGAGGGAGCGTGAGAGCGACGCGGTGGCGGAGATGGTGAGCGCGATAAAGGTGTTGCGCGACGGATTCGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATCGAGAGCATGCGGATGGAGATGGAGATGAAGCGCACGGAGATGATCCTGGACTCGCAGCAGAGGATCGTGGAGGCTTTCGCTAGGGCCGTTTCGCAAAAGAGGAGCAAGGGCAAGTCCACGCCTTCTCCCTCGTCGCAACCGTGA 957 0.6238 MASPSSPTDSNPPSAVPLPLPAPPSTSSRRLPPPCWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVTAQCPNAAPTAKTAVQCRHKMEKLRKRYRTEIQRLRSLPLPRLINTTTASPSSWVHFKSMDSMEKGPNKPHIDTTTATATNPNTPTNNLNFPDDENDDDDLYEEFKNAPGSNTRSLNKLYKNGFGPGSASGFRIRIPAGVPNHAPSKFFNAPPPGMGPRNGAKRERESDAVAEMVSAIKVLRDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILDSQQRIVEAFARAVSQKRSKGKSTPSPSSQP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01221 318 Coils Coil 264 284 - -
Spst1g01221 318 MobiDBLite consensus disorder prediction 141 163 - -
Spst1g01221 318 Pfam Myb/SANT-like DNA-binding domain 34 135 IPR044822 -
Spst1g01221 318 FunFam Trihelix transcription factor ASIL2 36 102 - -
Spst1g01221 318 Gene3D - 36 102 - -
Spst1g01221 318 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 303 IPR044823 -
Spst1g01221 318 Coils Coil 90 110 - -
Spst1g01221 318 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Spst1g01221 318 SMART 118neu2 43 140 IPR006578 -
Spst1g01221 318 MobiDBLite consensus disorder prediction 10 31 - -
Spst1g01221 318 MobiDBLite consensus disorder prediction 134 163 - -
Spst1g01221 318 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01221 Spst-Chr1 14484123 14485079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01221 35 154 Trihelix Transcription Factor Family AT3G14180 30.833 1.61e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst1g01221 Myb_DNA-bind_4 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01221 - - gmx:102665993 452.595