Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01213 ATGGGTGTCGCTCAAAACGTTCATGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCCGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCTAAATTTCAAGAGATTGTTAACATTCGCTTAGGGGATGGAACTACTCGGCGTGGACAAGTGCTTGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAGTTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCACTGGATATGCTTGGCCGCATATTCAATGGTTCTGGAAAGCCAATTGATAATGGTCCACCCATATTGCCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCCAGTGAGCGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCCGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGAGACTGGAAAAGTCTGATAATCTTCTTGAGGGAGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCTCGAGAAGAAGTACCAGGTAGACGTGGGTATCCTGGTTACATGTATACCGATCTTGCAACAATATACGAACGTGCAGGAAGAATTGAGGGACGAACAGGCTCTATTACACAAATTCCTATTCTTACCATGCCTAACGACGATATCACGCATCCAACTCCTGATCTTACAGGATACATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACGCGAAGGGATCATGCTGATGTCTCCAACCAGCTCTACGCGAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCTGAGGATCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTATGACACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTGCGGATTTTCCCTCGTGAACTTCTTCATCGTATTCCTGCAAAGACTCTTGATCAGTACTACAGCCGAGATGCGGTTATGACAGGATATGTAAACGAGTTGAATCAAGATAGAAACTTGGCTTTGGCTTGA 1518 0.4394 MGVAQNVHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAVMTGYVNELNQDRNLALA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01213 505 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Spst1g01213 505 FunFam V-type proton ATPase subunit B, brain 29 490 - -
Spst1g01213 505 Gene3D - 29 489 - -
Spst1g01213 505 Hamap V-type ATP synthase beta chain [atpB]. 18 487 IPR022879 -
Spst1g01213 505 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 487 IPR022879 -
Spst1g01213 505 ProSitePatterns ATP synthase alpha and beta subunits signature. 369 378 IPR020003 GO:0005524
Spst1g01213 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 384 IPR027417 -
Spst1g01213 505 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Spst1g01213 505 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Spst1g01213 505 PIRSF V-ATPsynth_beta/V-ATPase_B 12 491 IPR022879 -
Spst1g01213 505 CDD ATP-synt_V_A-type_beta_C 388 482 - -
Spst1g01213 505 CDD V_A-ATPase_B 92 386 - -
Spst1g01213 505 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 378 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01213 Spst-Chr1 14432505 14439186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01213 1 486 Primary Pumps ATPases(2) AT4G38510 96.091 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01213 K02147 - gmx:100804483 951.814