Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01212 ATGGCCGGCATAGACTTGGGTTCAGCATCACATTTTGTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGAGAACCAACAAGACCAAGACAACAACGTTAACGATCACGAAGGTCTTGACCTAGTTACAACAAATCAAGGTCCTGGTGATATTGTTGCTCGCAGGCCAAGAGGAAGACCTCCAGGTTCAAAGAACAAGCCTAAACCACCAGTTATCATCACACGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTTAGTAGTGGTTGCGATGTCTTTGACTCCGTCGCTACCTATGCAAGGAAGCGACAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAACGTCACGTTGCGGCAGCCGGCCGCTGCCGGCGCCGTCGTCACACTGCATGGAAGGTTCGAGATCCTGTCTTTGTCAGGATCATTTCTTCCACCTCCTGCTCCACCTGGTGCCACAAGTTTGACTGTATTTCTTGGTGGAGGGCAGGGTCAGGTTGTGGGAGGAAACGTCGTTGGTCCTTTGATAGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAATGTGGCATATGAGAGGTTGCCTTTAGATGAAGAAGAAGCTATGCAGATGCAACAAGGACAATCATCTGCTGGAGGTGGTAGCGGTGGTGGTGGTGGCGGAGGTAGTGGTGGTGGAGTCAGTAATAACTCTTTTCCTGACCCCTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCTGGTGGAAGGCAATCTTACTGA 828 0.5012 MAGIDLGSASHFVHHRLQRPDLEDDENQQDQDNNVNDHEGLDLVTTNQGPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEEEAMQMQQGQSSAGGGSGGGGGGGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01212 275 Gene3D - 83 218 - -
Spst1g01212 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 230 IPR014476 GO:0003680
Spst1g01212 275 CDD DUF296 84 159 IPR005175 -
Spst1g01212 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 214 - -
Spst1g01212 275 MobiDBLite consensus disorder prediction 209 253 - -
Spst1g01212 275 MobiDBLite consensus disorder prediction 18 73 - -
Spst1g01212 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Spst1g01212 275 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Spst1g01212 275 FunFam AT-hook motif nuclear-localized protein 83 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01212 Spst-Chr1 14418503 14419330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01212 1 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.907 7.88e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01212 - - vra:106758954 464.151