Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01201 ATGGAGGATTCATTGGAGAATTGGATTTCCAATTTGGAAATGGAAGACTATGATGTTGGGTTGAGTCAAAGTCATGGTTCATTTGATGAACAAGAGTTCCTAAGAGAGATCCTTGAGGAGCAACAAGATTTGTCACCTCAAGGAGAGAATCTAAGCCCCTCCAACAGCAGTGTGTCCTTTGATGAGGCAACTGGTGGCACTCTCCACAAAAGCAACAGCTCCAACTCCATCAAGTCCTTCAAAACATCACCATCATCATGTGCCTCTCCAGCCACCACATACCTTCTCTCTTTTGATACTTCAACTGCTGAACCAATCACTCATCATAAGCCTTCCCCAAAACTTGGTTCATCACTTCAGGAATCTTCCAGTAAAAGGGGTGCTGTGGTGAAAGATGGACCTCAGTTTGAACCCTTCATGGCTCAGCCAAGAAAGAAGGTTAGAAGGTCTTCTGAGATTCAGCATCACATCATGGCTGAGAGGAAAAGAAGACAGGAACTCACAGGTAGCATCATTGCTCTTTCAGCAACTATTCCTGGACTCAAGAGGATGGACAAGGCTTATGTTCTTCGTGAAGCAGTGAATTACACAAAACAACTTCAGGAGCGAGTTAAAGAGTTGGAGAATCAAAACAATGATAAAAGCGTTCAACATTCATCAGCATTGGTAAGGAAATATCAAGCCAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTTGTAGATGAGGAAGTACTGATTGGCATCCATTGTGAGAAGCAAAAAGACATAGTCTGCAAAATACATGTCTTGCTTGAAAAACTCCATCTTTCCCCAAGTAGTAGCAGTGTACTACCATTTGGCACTTCTACTCTTGTAATCCACATCATTGCTCAGATGGATGAATGCAGAATGAGCATGGAGGAAGTAGTGAAGAAACTGAGAGAATATCTGTTAGAGGTGTATGACATGCAACAGTGA 960 0.4229 MEDSLENWISNLEMEDYDVGLSQSHGSFDEQEFLREILEEQQDLSPQGENLSPSNSSVSFDEATGGTLHKSNSSNSIKSFKTSPSSCASPATTYLLSFDTSTAEPITHHKPSPKLGSSLQESSSKRGAVVKDGPQFEPFMAQPRKKVRRSSEIQHHIMAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTKQLQERVKELENQNNDKSVQHSSALVRKYQANKESLFEVEARVVDEEVLIGIHCEKQKDIVCKIHVLLEKLHLSPSSSSVLPFGTSTLVIHIIAQMDECRMSMEEVVKKLREYLLEVYDMQQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01201 319 SMART finulus 157 206 IPR011598 GO:0046983
Spst1g01201 319 MobiDBLite consensus disorder prediction 43 89 - -
Spst1g01201 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 220 IPR036638 GO:0046983
Spst1g01201 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Spst1g01201 319 Coils Coil 190 217 - -
Spst1g01201 319 MobiDBLite consensus disorder prediction 104 125 - -
Spst1g01201 319 Gene3D - 142 217 IPR036638 GO:0046983
Spst1g01201 319 MobiDBLite consensus disorder prediction 104 151 - -
Spst1g01201 319 MobiDBLite consensus disorder prediction 22 89 - -
Spst1g01201 319 PANTHER BHLH TRANSCRIPTION FACTOR 32 311 - -
Spst1g01201 319 Pfam Helix-loop-helix DNA-binding domain 154 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01201 Spst-Chr1 14322098 14324621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01201 120 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 39.286 5.87e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g01201 HLH 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01201 - - gmx:100818334 372.089