Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01170 ATGGCCATGGAATTTCAGAATTTGCTACACTTTTGGGCTCTCTCCTCATCACTCTTCCTCATCCTATTGATCCATGTTCAAGCTGCCCCTCCTCACTCTCTTGTCACACACCTCCCTGGCTTCAACTCCAATTTTCCATCCAACCACTATTCCGGATATATAAGTATTGATGGAGATTATGAGAGTGGGAAGAACCTGTTCTACTACATGGTGAGTTCAGAAAGAAGTGCAGAGAAGGACCCAGTGGTGCTATGGCTGAACGGTGGACCTGGGTGTTCCAGCTTCGATGGATTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTCCAAAATCAAAAGGGGATCTACCCACTTTGCATATCAATCCTTATAGCTGGTCCAAGGTTTCGAACATCATATATTTGGATTCTCCTGCGGGTGTTGGACTCTCTTATTCAACGAACAAAAGCAAATATGTAACTGGGGACCTACAAACTGCGTCTGATACTCATGTTTTCCTCTTAAAGTGGTTTGAGCAATTTCCAGAATTCCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTACGCTGGAGTTTATGTGCCTACTTTGGCTTTTGAAGTTGCCAAAGGAATCCGGAGTGGTGCAAAGCCCGTGATCAATTTTAAGGGTTACATGGTTGGAAATGGTGTCACAGACAATGTCTTTGACGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGTGTTCACATCAATTATGAAATTCAATTACAATTTGCAGGATTTACAAGCTACGTGCAAAGGAAACTACTACGATGCCTACTCTTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAATATACTAGAGCCATGCTACCATTTCCCTGATAATAGCACAGGCAAAGAAAATGGAAAGTTACCAGTGAGTTTCAAGCAATTAGGAGTTACTGAGAAGCCTCTCCCAGTGAGGAAGAGAATGTTTGGAAGAGCTTGGCCTTTTCGAGCACCAGTCAAAGCTGGTCTTGTTACATTATGGCCCCAATTGGCAGAAACGAGGCATGTCGCTTGTGTAAATGATGAAGTAGCAAGTTCATGGCTAAACAATGCTGCAGTGAGGAAAGCCATTCATGCTGAATCGGAAAGTGTGGCGGGTGCATGGGAACTATGCACGGGTAGGATAGAATACCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCATGTTGGGTTATCAGGCACTTATTTTCAGTGGTGACCATGACATGTGTGTACCATTCACTGGAAGTGAGGCTTGGACTCGATCTCTGGGGTATAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATGACCAAGTTTCTGGGTACTTACAAGCTTACGAGAACAATCTCACCTTCCTAACAATTAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGGGAAGCGTTGGATTTTTTCAGCCGGTGGTTGGAAGGAAAGAAAATATAA 1554 0.4408 MAMEFQNLLHFWALSSSLFLILLIHVQAAPPHSLVTHLPGFNSNFPSNHYSGYISIDGDYESGKNLFYYMVSSERSAEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAPKSKGDLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSTNKSKYVTGDLQTASDTHVFLLKWFEQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGIRSGAKPVINFKGYMVGNGVTDNVFDGNALIPFVHGMGLISDSIYEVFTSIMKFNYNLQDLQATCKGNYYDAYSLDENDVCYKTIEKVDRAIDGLNVYNILEPCYHFPDNSTGKENGKLPVSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKAGLVTLWPQLAETRHVACVNDEVASSWLNNAAVRKAIHAESESVAGAWELCTGRIEYHHNAGSMIPYHKNLTMLGYQALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSNDQVSGYLQAYENNLTFLTIKGAGHTVPEYKPREALDFFSRWLEGKKI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01170 517 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 501 IPR001563 GO:0004185|GO:0006508
Spst1g01170 517 Pfam Serine carboxypeptidase 39 514 IPR001563 GO:0004185|GO:0006508
Spst1g01170 517 Gene3D - 370 517 - -
Spst1g01170 517 SUPERFAMILY alpha/beta-Hydrolases 35 515 IPR029058 -
Spst1g01170 517 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Spst1g01170 517 Gene3D alpha/beta hydrolase 28 335 IPR029058 -
Spst1g01170 517 FunFam Carboxypeptidase 28 330 - -
Spst1g01170 517 FunFam Carboxypeptidase 372 516 - -
Spst1g01170 517 ProSitePatterns Serine carboxypeptidases, histidine active site. 484 501 IPR033124 GO:0004185
Spst1g01170 517 FunFam Carboxypeptidase 419 514 - -
Spst1g01170 517 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Spst1g01170 517 PRINTS Carboxypeptidase C serine protease (S10) family signature 484 497 IPR001563 GO:0004185|GO:0006508
Spst1g01170 517 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Spst1g01170 517 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01170 Spst-Chr1 14043695 14048186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01170 378 517 Calmodulin-binding Proteins AT2G22960 47.857 2.58e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01170 K16296 - gmx:100790895 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01170 1 14043695 14048186 Spst1g01170 1 14043695 14048186 ECH
Spst1g01170 1 14043695 14048186 Spst4g01894 4 59521248 59523131 PCT