Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01167 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGCGAACGCCATCCTTACTCTATAATAGAGAGTGAGCCTAAGCGTGAAGTCATCTTACCATCTGTAATCTATATACAAAAGATTTTGCGGAGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGGTTCCTCCAGTCCTTGGAGCTTTTTGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACCGCACTTGCATTCTCCCAGAAGTTGTCTGGTCTCCCACCAGAAACTGTGTTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGATAACAGCCTTGATGACCTTATTTCAATTCTGAAACGGGGAAAAGTAGAGGATAATCTTTTGGACTTTTTCCCCCCTACAAAAAGATCCAATGAAGCTTTCTCTGAGCATTTCAGCAAGGAAGGACTGGTGGCCTTGGTGGAGTATAATGAAAAGAAAATTTTTGAGGTGAAATTGAAGGAAATGAAGTCTGCTTTAACAACACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGTTGCGAGTTAGAGATGCTAAATTGCCGGACATTGAGGTGGTGCGGGTCTTGTGGGATGTTTTAATGGATGCTGTGCAGTGGTCTGGAAAAAATCAGCAGCAGAATGCAAATGCAGCCCTTCGTCAGGTAAAAACTTGGGCAGAACTGTTGAATACATTCTGTACCAGTGGGAAACTTGAGCTGGAACTTATGTACAAAGTACAGATGCAATGCTACGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTGTTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAGCCCTTTGTTAATTGGCTGGAGGAGGCTGAGGAGGAGGAGTAA 1236 0.445 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVAFTGGRTQPGTTKPDEGERHPYSIIESEPKREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPTKRSNEAFSEHFSKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEEADTSEVIETVKLRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01167 411 Coils Coil 121 141 - -
Spst1g01167 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
Spst1g01167 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Spst1g01167 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Spst1g01167 411 SMART 542_3 325 410 IPR003307 GO:0005515
Spst1g01167 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Spst1g01167 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Spst1g01167 411 Gene3D - 243 411 - -
Spst1g01167 411 FunFam ARM repeat superfamily protein 243 411 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01167 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 4.88e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01167 - - gmx:100789838 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01167 1 14018714 14022873 Spst1g01167 1 14018714 14022873 ECH