Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01155 ATGGAATCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATTAGGACCGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCTGCTGCACGGATGAAAGGTGAATTCCCAGAAAGAATAGGACAGCCAGAATGCCAGTACTACTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCAGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCTAATGAGCCTGAATGTGCGTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCCCAGCCAAGCAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTACTGTCCAATCTCCTACTACACCAGGTCAGCAGTCATATGCAACAGGAATTACAAATTGGCCTAGTTCATCATATATACCTAGCCCACGATGGCAAAGCCCTTCAAGTTATGCTCCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCAGGGTGGAGTGCATACAGTGGTCAAATGGGATCAGACAGTTCACAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTAATCGGCAAAGTGAACCGGCAAATGCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCCGTCCCTGTAGGTTTCTATGCGTTGCAGAGAGAGAACATATTTCCCGAGAGACCTGATCAACCTGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCAGCTCCTGACTGTGTTTTGAGTCCTATAGGCCTTCCTTTACGTCCTGGAGAGCCTCTTTGTGTCTTCTATTCACGTTATGGCATATGTAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCATCACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCGGGAAGGCGAATATTAGGTTCTTCATCAGGAACTTCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACCCGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1194 0.4456 MESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVQSPTTPGQQSYATGITNWPSSSYIPSPRWQSPSSYAPLILPQGMVSVPGWSAYSGQMGSDSSQQTMGNGQSYGTNRQSEPANAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVITYNISASPSADAPGRRILGSSSGTSALNLSSEGLVESGSANPRRLSLSETRQIPSGDDNIDEEG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01155 397 FunFam Zinc finger nuclease 2 8 85 - -
Spst1g01155 397 SUPERFAMILY CCCH zinc finger 14 37 IPR036855 GO:0046872
Spst1g01155 397 Gene3D - 255 342 - -
Spst1g01155 397 Gene3D - 8 84 - -
Spst1g01155 397 MobiDBLite consensus disorder prediction 199 233 - -
Spst1g01155 397 ProSiteProfiles Zinc finger C3H1-type profile. 10 37 IPR000571 GO:0046872
Spst1g01155 397 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Spst1g01155 397 Gene3D - 85 135 - -
Spst1g01155 397 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Spst1g01155 397 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Spst1g01155 397 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Spst1g01155 397 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Spst1g01155 397 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Spst1g01155 397 SMART c3hfinal6 54 81 IPR000571 GO:0046872
Spst1g01155 397 MobiDBLite consensus disorder prediction 362 387 - -
Spst1g01155 397 SUPERFAMILY CCCH zinc finger 103 128 IPR036855 GO:0046872
Spst1g01155 397 MobiDBLite consensus disorder prediction 362 397 - -
Spst1g01155 397 SUPERFAMILY CCCH zinc finger 260 286 IPR036855 GO:0046872
Spst1g01155 397 SUPERFAMILY CCCH zinc finger 58 83 IPR036855 GO:0046872
Spst1g01155 397 PANTHER PROTEIN PHOSPHATASE RELATED 2 349 - -
Spst1g01155 397 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Spst1g01155 397 FunFam CCCH type zinc finger protein 255 340 - -
Spst1g01155 397 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Spst1g01155 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 36 IPR000571 GO:0046872
Spst1g01155 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 127 IPR000571 GO:0046872
Spst1g01155 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 284 IPR000571 GO:0046872
Spst1g01155 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Spst1g01155 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 57 81 IPR000571 GO:0046872
Spst1g01155 397 SUPERFAMILY CCCH zinc finger 306 330 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01155 Spst-Chr1 13893322 13899504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01155 1 394 C2H2 Transcription Factor Family AT3G02830 61.809 4.75e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst1g01155 zf-CCCH 4.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01155 - - gmx:100786261 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01155 1 13893322 13899504 Spst1g01155 1 13893322 13899504 ECH