Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01148 ATGGTTTCCCTTTCAACCACCGCCCGCTTTCTCCCCTTCACTGCACAAAACGCTTCCACCAGGATCCCTCCTCCCAATTCGTTCCGTTACAGCAAGCAACGTGATAGAGATCACTGGAAGGTTGTCTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCCCCATTAATTTCAACGGTTCGCACAAATCAGAACAGTTGGGCGCGGAGCGGGATCGGGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGACGTGTACAAATCTTTTGGTGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGGATAATTGGTCCCTCTGGAACTGGTAAATCTACAGTTTTGAAGATTATGGCAGGACTTCTTGCTCCGGACAAGGGGGAAGTTTACATTCGAGGCAAAAAGAGGGCTGGTTTAGTAAGCGATGATGACATATCGGGTCTTCGGATAGGATTAGTTTTCCAAAGTGCTGCACTCTTCGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGGTCAGATATCAGAGCTTGTCAAGGAAACCTTGGCCGCAGTTGGATTGAAGGGAGTTGAAGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATAATTTGTGACACTACAAAGGAATCAAATGAGCCAGAGGTGCTTTTATATGACGAACCAACTGCTGGACTTGATCCTATTGCATCTACTGTCGTTGAGGATCTTATTCGCTCTGTGCACATAAAAGGACGAGATGCTCGTGGAAAACCTGGGAATATTGCATCTTATGTGGTCGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTCACAACTTCAACAAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAGATATTAG 1038 0.448 MVSLSTTARFLPFTAQNASTRIPPPNSFRYSKQRDRDHWKVVCACIAPPQNFKSQDSSPINFNGSHKSEQLGAERDREDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIMAGLLAPDKGEVYIRGKKRAGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEGQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESNEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIRY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01148 345 Gene3D - 71 337 IPR027417 -
Spst1g01148 345 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
Spst1g01148 345 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Spst1g01148 345 CDD ABC_Org_Solvent_Resistant 85 334 - -
Spst1g01148 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 326 IPR027417 -
Spst1g01148 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 15 345 - -
Spst1g01148 345 SMART AAA_5 109 313 IPR003593 GO:0016887
Spst1g01148 345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Spst1g01148 345 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01148 Spst-Chr1 13834703 13838263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01148 91 329 Calmodulin-binding Proteins AT2G36910 27.600 1.26e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01148 - - gmx:100789283 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01148 1 13834703 13838263 Spst1g01148 1 13834703 13838263 ECH