Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01135 ATGGAGCTTCACAACCTCAATATTCTCATCACAATCTTGCTCCTATATTTGTTCCCTCACTCACAAAATTGCCAACAGGTATACCTTAACAACACTGTCTATGACTGCTCTAGCAACCCTTCTGCATCAAAAGGATATCTTTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCATACTTTTCAGGTCCAAATTTCCCTACGACAACCCTGTGAGCATTGCTTTCCTTCTTGGCTCTGAAACATCTGATATAGCCTCAATCAACAATATCTCAACAACTGACAAGATTCCTTCCAATAAGTGGATCATTGTTCCTGTCTTCTGTTCATGTTCTGGAAACATCTACCAGTATAATACTCGTTACACGGTCAAAGAGAATGACACCTACTGGGCGTTGGTAAATGAAACCTTTCAAGGCCTCACCACCTGCCAGGCAATTATGGGTCAGAATTACTATCCTCCAATCAATATTGCAATTGATGCAGAGCTCAAAGTACCTATGTTATGTGCTTGTCCCACTCTAAATCAGACATCAAGAGGGTTCACCTCTTTGCTAGTTTACTCGGTCAACTCTGGAGACACTGTTAAGTCCATAGGAGAGGCTTTTGGTGTGGATGAACAAAGTATACTAGAGGCCAATGAGTTGTCAGTGACACAGAGTGCACACAGCAGCATGAACCTCCTTGACTCGACACCTATTTTAGTTCCTCTAATAGGGAAGAACTGCAAAGAGAACCCAAATAAATTCTATTGTAAATGCTACCAAGAACCACAAACAGATGGAAGCTCCAATGGGCTATTATGTGATGAATCTGGTGACAAAAAATTTCCTGCCAAATTGGTTGCTGCTTTAGGAGAGATCCGTAAGGAAAAGCTGTTTAGGCAAAATGGTGGCTACTTGTTACTGGAGAAGCTCTCATCTTACGGAAATGGAGAAATGGAAAAGCTTTTTACAGCCGAGGACCTTCAAAGAGCAACAGATAACTACAACAGCAGTAGGTTTCTTGGCCAGGGTGGCTATGGCAGAGTGTACAAAGGAAAGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGAACATTGTCAAACTCTTTGGTTATTGTCTTGAGACAGAAGCACCATTACTAGTCTATGAATTAATTCCCAATGGAACACTTTCTCACCACATCCATAGGAGAGACAATGAGCCCTCCCTTTCTTGGGAGAGTCGCTTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCATCTTCAATTCCTATTTTGCATGGAGATATCAAACCTGCCAACATACTTTTAGGCAGTAACTACAGTGCCAAAGTGTCAGATTTTGGAACATCAAGATCAGTGCCACTAGATAAGACTCACTTGACCACTATTGTGGGAGGAACTTTTGGGTACATAGACCCTGAATATTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAG 1464 0.4153 MELHNLNILITILLLYLFPHSQNCQQVYLNNTVYDCSSNPSASKGYLCNGLQKSCTSFILFRSKFPYDNPVSIAFLLGSETSDIASINNISTTDKIPSNKWIIVPVFCSCSGNIYQYNTRYTVKENDTYWALVNETFQGLTTCQAIMGQNYYPPINIAIDAELKVPMLCACPTLNQTSRGFTSLLVYSVNSGDTVKSIGEAFGVDEQSILEANELSVTQSAHSSMNLLDSTPILVPLIGKNCKENPNKFYCKCYQEPQTDGSSNGLLCDESGDKKFPAKLVAALGEIRKEKLFRQNGGYLLLEKLSSYGNGEMEKLFTAEDLQRATDNYNSSRFLGQGGYGRVYKGKLPDGTIVAVKKNIVKLFGYCLETEAPLLVYELIPNGTLSHHIHRRDNEPSLSWESRFRIACEVAGAVAYMHFASSIPILHGDIKPANILLGSNYSAKVSDFGTSRSVPLDKTHLTTIVGGTFGYIDPEYFQIKVMCTVLG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01135 487 SMART serkin_6 329 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01135 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Spst1g01135 487 SUPERFAMILY Protein kinase-like (PK-like) 313 480 IPR011009 -
Spst1g01135 487 CDD LysM 186 216 IPR018392 -
Spst1g01135 487 Pfam LysM domain 187 217 IPR018392 -
Spst1g01135 487 Pfam LysM domain 121 166 IPR018392 -
Spst1g01135 487 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Spst1g01135 487 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 483 - -
Spst1g01135 487 ProSiteProfiles Protein kinase domain profile. 302 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01135 487 Pfam Protein kinase domain 358 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01135 487 Gene3D Transferase(Phosphotransferase) domain 1 314 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01135 Spst-Chr1 13733412 13741881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01135 288 477 Receptor kinase-like Gene Family AT1G16120 54.167 2.96e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst1g01135 Pkinase 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01135 - - gmx:100795455 733.406