Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01134 ATGGAGTTTCATCCTTACCTTTACATTCTCTGCATAATCCTGTTCTCACACGTGTTTCCTGAATCAGCTAACTGTCAACAAGTATACCTCAACAGCACTGTCTATGACTGCTCTCAGAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCTTCAAAACTCATGCACTTCCTTCTTGGTTTTCAGGTCCAAATCTCCCTATGACAACCCTGTAAACATTGCCTACCTTCTTGGCTCTGAAGCATCTACCATATCTTCAATCAACAACATCTCAAGAGATGACAAGATTCCTTCCAATAAGTCAGTTATTGTTCCTGTATTCTGTTCATGTTCTGGAAATATCTACCAGCATAACACACCTTACACTGCCACCAAGAATGACACCTACTTCAAGTTGGTTAAAGAAACTTACCAAGGCCTCACCACCTGCCAAGCACTGATGGGTCAGAATTACTATGCCTCTGATGACATTAGAGTTGGTGCTGAGCTCACAGTTCCAGTAGTATGTGCTTGTCCAACTGAAAATCAGACAGCAAGAGGCGTCACTTCCTTGCTGGTTTACTCAGTGAACAATGGTGATACTATTAAGTCCATTGGAGAGGCTTATGGTGTTGAAGTACAAAGTATGCTAGAGGCCAATGGGTTGTCAGTGCCACCAAGTGCAGAGAACGACATAATCATCTATCCCACAACTCCTATCTTGGTTCCTCTTAGTGGGAAGAGTTGCAAAGAGGACCCAAATAATTTCTATTGTACTTGCTCCCATGGAAGGGCTGAGGCTGGAATAGGGATCCAATGTAATGAATCTGATGATAAAAAATTTCCTACCAAATTGGTCGCTTCATTAGGCGTTGGAATTGGGGCAGGCTTTGTGTGTTTATTTCTTTTGGGGTACAAATCATATCAATACATTCAGAAAAAGAGAGAAATTATTCGAAAGGAAAACCTATTCAGGAAAAATGGTGGTTACTTGTTACAAGATAAGCTCTCGTTTTATGGAAATGGAGAAATGACAAAGCTGTTTAAAGCTGACGAGTTACAGAAAGCAACAGATAACTACAACAGAAGTAGATTTCTTGGTCAGGGTGGCTTTGGCACTGTATATAAAGGAATGCTACCAGATGGAAACATTGTTGCAGTTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTGATTCTATCCCAGATCAACCACAGGAACATTGTCAAGCTCTTTGGTTGCTGTCTTGAGACAGAAACTCCTTTATTAGTCTATGAATTCATTCCCAATGGAACACTTTCTCACCATATCCACAGGAGAGACAATGAGGTCTCCCTTTCATGGGACAGTCGTCTTAGGATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTATTCCCATCTTCCATAGAGACATCAAACCTACCAACATACTTTTAGACAGCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTGTAGGAGGAACTTTTGGGTACATAAACCCTGAATATTTTCAGTCTAGTCAGTATTCAGATAAAAGTGATGTGTATAGTTTTGGGGTAGTGCTTGTAGAGCTCATAACTGGGAGAAAGCCTATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGGTTGCACAGTTCATTTCTCTGATGAAGGACAACCAGGTTTATGAAATTTTAGATGCCAGGGTGGCTAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAACCTTGCAATGAGATGCTTGAGACTTAGTGGGAAGAAAAGGCCAACAATGAAAGAGGTTGCATTGGAATTAGAAGCATTGAGAAACGTGCAAAGTTCCTTGCAGATCAACCATGATCATGAGTGCACAACTAGTGACATAGTTCAAGAATGCACAGAGGAAAGCATACCACTGTGTTTCCAACTAGAGTCCACATCCTTTTAG 2004 0.4127 MEFHPYLYILCIILFSHVFPESANCQQVYLNSTVYDCSQNPSAPKGYLCNGLQNSCTSFLVFRSKSPYDNPVNIAYLLGSEASTISSINNISRDDKIPSNKSVIVPVFCSCSGNIYQHNTPYTATKNDTYFKLVKETYQGLTTCQALMGQNYYASDDIRVGAELTVPVVCACPTENQTARGVTSLLVYSVNNGDTIKSIGEAYGVEVQSMLEANGLSVPPSAENDIIIYPTTPILVPLSGKSCKEDPNNFYCTCSHGRAEAGIGIQCNESDDKKFPTKLVASLGVGIGAGFVCLFLLGYKSYQYIQKKREIIRKENLFRKNGGYLLQDKLSFYGNGEMTKLFKADELQKATDNYNRSRFLGQGGFGTVYKGMLPDGNIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLFGCCLETETPLLVYEFIPNGTLSHHIHRRDNEVSLSWDSRLRIACEVAGAVAYMHFAASIPIFHRDIKPTNILLDSNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYINPEYFQSSQYSDKSDVYSFGVVLVELITGRKPISFLEEDEGQNLVAQFISLMKDNQVYEILDARVAKEARKDDILAIANLAMRCLRLSGKKRPTMKEVALELEALRNVQSSLQINHDHECTTSDIVQECTEESIPLCFQLESTSF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01134 667 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Spst1g01134 667 Pfam LysM domain 188 219 IPR018392 -
Spst1g01134 667 FunFam Wall-associated receptor kinase 2 325 429 - -
Spst1g01134 667 SMART LysM_2 187 237 IPR018392 -
Spst1g01134 667 SMART LysM_2 121 167 IPR018392 -
Spst1g01134 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 103 633 IPR045274 GO:0007166
Spst1g01134 667 Gene3D Transferase(Phosphotransferase) domain 1 430 652 - -
Spst1g01134 667 FunFam Wall-associated receptor kinase 2 430 647 - -
Spst1g01134 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Spst1g01134 667 CDD LysM 187 219 IPR018392 -
Spst1g01134 667 Pfam Protein kinase domain 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01134 667 SUPERFAMILY Protein kinase-like (PK-like) 338 624 IPR011009 -
Spst1g01134 667 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01134 667 ProSiteProfiles Protein kinase domain profile. 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01134 667 Gene3D LysM domain 175 246 IPR036779 -
Spst1g01134 667 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Spst1g01134 667 CDD STKc_IRAK 360 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01134 Spst-Chr1 13730026 13732247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01134 284 629 Receptor kinase-like Gene Family AT1G16130 57.471 3.72e-141 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst1g01134 Pkinase 3.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01134 - - vun:114186184 1181.01