Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01133 ATGGAGCTTCTTCACAACATCAACATTCTCACCACAATTCTGCTCCTATGCATATTCCCTCACTCACTCAAGTGCCAACAAGAATACCTCAATGGCACTGTCTATGACTGTTCTGAGAGCCCTTCAGCACCAAAAGGGTACCTTTGCAATGGCCTTCAGAAGTCATGCTCTTCCTTCTTACTTTTCAGGTCCATACCTCCCTATGATAACCCTGTCAGAATTGCCTACCTTCTTGGATCCGAGGCATCTACCATTGCCTCAATCAACAAGATCACAAGAAATGACAAGATTGCTTCCAACAAGACAATCATCGTTCCTGTATTCTGTTCATGTTCAGGAAACATTTACCAGCATAACACTCCTTACACTGCCAGCAAAAATGACACCTATTATCAGTTGGTAAAAGAAACCTTTCAAGGCCTCACTACGTGTCAGGCAATGATGGGTCAGAATTACTATGCAGCTACCAACATTGCAATTGGTGCTGTGCTTACAGTTCCGTTGTTATGTGCTTGTCCAACTGAAAATCAGGCAGCAAGAGGGATCACCTCCTTGCTGGTTTACTTGGTGAACTATGGTGACACTATTAAGTCCGTAGGAAAGGCTTATGGTGTCGATGAACAAAGTATGCTTGAGGCCAATGAGTTGGCTGTGCCAGAAAGTGCAGAGAGCAGAATGAACCTCGTTACATTGACACCTCTTTTAGTTCCTTTACCAGGGAAGAACTGCAAAGAGAACCCAGATGAATTCTATTGTACATGTTACCAAGCACCAGATGGAAGCTCCAAGGGGCCCTTCTGTGATGAATCTGATGGTCAGAAATTCCCTGCCAACTTGGTAGCTGCTTTAGGAGTTGGTATTGGTGGAGGCTTTCTGTTTTTGTTTCTTTTTGGGTACAAATCATATCAATACATTCAGAAAAATAGAGAAAGTATCCGTAAGGAAAACCTTTTCAAGCAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCATCTTACGGAAATGGAGAAATGGCAAAGCTGTTTACAGCCAAGGAGCTAGAAAGAGCAACAGATAACTACAACAGAAGTAGGTTTCTCGGTCAGGGTGGCTATGGCACAGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAGGTCCAAAGAAATTGAAAGGAACAAGATAGAGACTTTTGTGAATGAAGTTGTGATTCTATCCCAGATCAACCACAGGAACATTGTCAAGCTATTAGGTTGCTGTCTTGAGACAGAAACTCCTTTATTAGTCTATGAATTCATTCCCAATGGAACACTTTCTCACCATATCCACAGGAGAGACAATGAGGTCTCCCTTTCATGGGACAGTCGTCTTCGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTATCCCCATCTTCCATAGAGACATCAAAACTACCAATATACTTTTAGACAGCAACTTCAGTGCCAAGGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGACAAGACTCACTTGACCACAGCTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTTCAGTCTAGTAAGTTTTCAGATAAGAGTGATGTGTATAGTTTTGGGGTAGTGCTTGTAGAGCTCATAACTGGGAGAAAGCCTATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCACAGTTCATTTCTCTGATGAAGGAGAACAAAGTTTATGAAATTTTAGATGGCAGGGTCGCTAAGAAAGCAAGGAAAGATGACATTCTTGCCATTGCAAACCTTTCTATGAGATGCTTGAGACTTAACGGGAAGAAAAGGCCAACAATGAAAGAGGTTTCATTAGAATTAGAAGCATTGAGAAAGGTACAAAGTTCCTTACAGATCAACCATGATCATGAGCACAAAACCAGTGATATCGATCAAGATTGCACAGAGGAAAGCATGTCGCTGTCCCTACAACTAGAATCCACATCATTTTAG 2004 0.4187 MELLHNINILTTILLLCIFPHSLKCQQEYLNGTVYDCSESPSAPKGYLCNGLQKSCSSFLLFRSIPPYDNPVRIAYLLGSEASTIASINKITRNDKIASNKTIIVPVFCSCSGNIYQHNTPYTASKNDTYYQLVKETFQGLTTCQAMMGQNYYAATNIAIGAVLTVPLLCACPTENQAARGITSLLVYLVNYGDTIKSVGKAYGVDEQSMLEANELAVPESAESRMNLVTLTPLLVPLPGKNCKENPDEFYCTCYQAPDGSSKGPFCDESDGQKFPANLVAALGVGIGGGFLFLFLFGYKSYQYIQKNRESIRKENLFKQNGGYLLQEKLSSYGNGEMAKLFTAKELERATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKRSKEIERNKIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSHHIHRRDNEVSLSWDSRLRIACEVAGAVAYMHFAASIPIFHRDIKTTNILLDSNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSKFSDKSDVYSFGVVLVELITGRKPISFLEEDEGQNLIAQFISLMKENKVYEILDGRVAKKARKDDILAIANLSMRCLRLNGKKRPTMKEVSLELEALRKVQSSLQINHDHEHKTSDIDQDCTEESMSLSLQLESTSF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01133 667 Pfam Protein tyrosine and serine/threonine kinase 357 622 IPR001245 GO:0004672|GO:0006468
Spst1g01133 667 SUPERFAMILY Protein kinase-like (PK-like) 337 624 IPR011009 -
Spst1g01133 667 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Spst1g01133 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Spst1g01133 667 FunFam Wall-associated receptor kinase 2 430 647 - -
Spst1g01133 667 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01133 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 103 635 IPR045274 GO:0007166
Spst1g01133 667 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Spst1g01133 667 Gene3D Transferase(Phosphotransferase) domain 1 430 653 - -
Spst1g01133 667 ProSiteProfiles Protein kinase domain profile. 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01133 667 FunFam Wall-associated receptor kinase 2 325 429 - -
Spst1g01133 667 Pfam LysM domain 188 220 IPR018392 -
Spst1g01133 667 CDD STKc_IRAK 360 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01133 Spst-Chr1 13720990 13723621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01133 284 628 Receptor kinase-like Gene Family AT1G16130 59.654 2.45e-145 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst1g01133 PK_Tyr_Ser-Thr 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01133 - - gmx:100795455 1137.87