Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01131 ATGTCATTGTTATCTCCCTCTCCCTCCTTCTCCGACGAGCCACCCATGAACCTCACCCCAAATAATGGCTTAGACATATTCACGAGGATATTTCTCGTGCTCATATTTATGTCTCTCTTCATTCGAGTGTGTTACGTGTACGTTTCTCTACGACGTAACGATCATGGCAGCGACAACATCAGCAACAGCATCGCCTCCATGATCCACCATGATAACGATCAAAATAATAACCTCACAGGACTACCCTTTGACGTCATAAAGTCCTACCACACTTTCCCCTACAGCAAAACCAACAGTGTGGCAACAATGTACGACCACGACTCCACCTGCGCCATTTGTATCGAGGATTACCAGGAATCGGAGATGCTAAGGATGATGCCGCACTGTCGCCACTACTTTCACCGAGATTGCATTGACGTGTGGTTGAAGGTTCATGCGTCGTGTCCCGTGTCAGCTGAGGCCCTCACCCACCCTTTACCCTTCCCAAATGGAGAATCTCTTTTCTCTTCTTCTTCCTCCTCTGTCTCTTCTTCTTCTTCTTCTTCTTTCCCTTTCTCCATGTCCCCTTCCATTCCCTCCCCTCACTTCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCCTTCCTTTTTCTCCTCTCCACCCTTCTCCTCTCCTCCTACCTCTGCTGCCGCACAACCCGCCAACGCAACCAAACCACCGCCGTCACCGCCGCCGCCAACCCCTCCGACGGCGTCGTCATTCCGCGTGTCATCTTTGTGGCTGAGGACGAGGACGAGGAGGAGGCCAACGTTGCGGTGGGGCTCGACCAGAGCGTCATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGCAATAACACCACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGCTGCCTCGATTCCTGGCTCAGACTCAGAGGCTCCTGCCCCGTGTGCCGCAACTCGCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTAGTGCCGCTCTCTCAGTACGCCGCCGATAGACGGCGAAAATCCCTTGGTGATGCTAATTTCCTGGCTCTTCATTATCCCATGTCAGATGATTCGCATTTCATTGCATTAGCTTTGGTCATTGGCTTTGCCTCCACTTCATTCAGGACACGAAGATATTGGTATTAG 1233 0.5304 MSLLSPSPSFSDEPPMNLTPNNGLDIFTRIFLVLIFMSLFIRVCYVYVSLRRNDHGSDNISNSIASMIHHDNDQNNNLTGLPFDVIKSYHTFPYSKTNSVATMYDHDSTCAICIEDYQESEMLRMMPHCRHYFHRDCIDVWLKVHASCPVSAEALTHPLPFPNGESLFSSSSSSVSSSSSSSFPFSMSPSIPSPHFTHLGLGYSIAIALAFLFLLSTLLLSSYLCCRTTRQRNQTTAVTAAANPSDGVVIPRVIFVAEDEDEEEANVAVGLDQSVINSYPRFQFDRDNARNSNGNNTTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRKSLGDANFLALHYPMSDDSHFIALALVIGFASTSFRTRRYWY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01131 410 ProSiteProfiles Zinc finger RING-type profile. 110 150 IPR001841 -
Spst1g01131 410 PANTHER RING-H2 FINGER PROTEIN ATL67 176 368 IPR044289 GO:0016567|GO:0016740
Spst1g01131 410 CDD RING-H2_PA-TM-RING 109 150 - -
Spst1g01131 410 SMART ring_2 110 151 IPR001841 -
Spst1g01131 410 SMART ring_2 299 340 IPR001841 -
Spst1g01131 410 ProSiteProfiles Zinc finger RING-type profile. 299 341 IPR001841 -
Spst1g01131 410 SUPERFAMILY RING/U-box 298 345 - -
Spst1g01131 410 Pfam Ring finger domain 109 150 IPR001841 -
Spst1g01131 410 Pfam Ring finger domain 298 341 IPR001841 -
Spst1g01131 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 345 IPR013083 -
Spst1g01131 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Spst1g01131 410 SUPERFAMILY RING/U-box 104 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01131 Spst-Chr1 13708648 13714005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01131 193 360 C3H Transcription Factor Family AT5G07040 43.787 1.21e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01131 - - gmx:100793332 241.891