Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01120 ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGTTGCTCCATCGTCACATCATCCTCCGTGTCTTCTTCTTCTGCTTCCTCTTCCTCCTCCGGTTTTGCCTCTTGTTACTTCCTCTCTGAAGGGCTTTCCTCCTCCTCTTCTTCTTCTTCTGGCTTCTCTATCTTCAAAGGTGAACAAGGAAGCCAAGTTTTGTCGCTTACTTCGTACCCCTTTGAGGCAAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCTCAGCCTCTCTCGTTGCAAGCCTCCTCCCCCCTGTCCTCACTCTCTTCCTATTCCTCTGCGCCACCTAAACCGGTTTTAACTCAAGAGAGGCAACAACAACAGCGGAACAAGCAGCCACACTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCATTTGAAAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCGAAGGGGTGCTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACAATGTTCATAGTTACTTATACTGCTGAGCACAATCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCAACCCAAACCGCCACCACTGAACAAGACTCCGACAAGAGCAAGAGCCTCACGAAACCCTCTTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAGCACAAGGGGAAAAGTCCGAGAGCAGAGAAGAGAAAGAGGATATGATGGATGACGAGGAAGAAGATGAATTTGGGTTGTCTGACATGGTTCTAACAGATGATTTCTTTGAGAGTTTGGATGAGCTGAGTCAACTCACTGCCCCTTCTGTTGTCACAGGAGACTGCTTCAGTGACCCCTTTTCAGCTATAGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGCATATGA 1047 0.4957 MAEDWDLHAVVRGCSIVTSSSVSSSSASSSSSGFASCYFLSEGLSSSSSSSSGFSIFKGEQGSQVLSLTSYPFEARSSIEELHELCKPFFSKSQPLSLQASSPLSSLSSYSSAPPKPVLTQERQQQQRNKQPHSVTTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLATQTATTEQDSDKSKSLTKPSSPATSGAEEEVPAQGEKSESREEKEDMMDDEEEDEFGLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01120 348 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01120 348 Gene3D WRKY domain 143 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01120 348 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01120 348 MobiDBLite consensus disorder prediction 217 260 - -
Spst1g01120 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 313 IPR044810 GO:0003700
Spst1g01120 348 MobiDBLite consensus disorder prediction 107 148 - -
Spst1g01120 348 SUPERFAMILY WRKY DNA-binding domain 157 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g01120 348 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g01120 348 MobiDBLite consensus disorder prediction 214 295 - -
Spst1g01120 348 MobiDBLite consensus disorder prediction 281 295 - -
Spst1g01120 348 FunFam WRKY transcription factor 22 143 213 - -
Spst1g01120 348 MobiDBLite consensus disorder prediction 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01120 Spst-Chr1 13605337 13606934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01120 1 348 WRKY Transcription Factor Family AT4G01250 46.814 1.47e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g01120 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01120 K13425 - gmx:100798084 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01120 1 13605337 13606934 Spst4g01880 4 59381163 59382644 ECH
Spst1g01120 1 13605337 13606934 Spst10g00920 10 9976422 9977669 ECH
Spst1g01120 1 13605337 13606934 Spst1g01120 1 13605337 13606934 ECH
Spst4g01880 4 59381163 59382644 Spst1g01120 1 13605337 13606934 ECH
Spst4g02318 4 63906552 63915374 Spst1g01120 1 13605337 13606934 ECH
Spst1g01120 1 13605337 13606934 Spst4g01880 4 59381163 59382644 PCT