Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01113 ATGGTGTCCCTCAACCCAAACCCCCCTCAAGCTTTTCCCTTCTTCGACCCCTTCAACATGGAGGATCCCAATAAGAAGGTTCGAAAGCCTTACACCATTACCAAGTCCAGAGAGAACTGGACCGACCACGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGTCCGAAAAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTTACTTTATCCAAAGTTACGAGGCCTTTGCAATCTTCATCTGCTTTGTCTGAATCATCATACATTTATAGGCCGGACTCATCATCTGTGCTTAGAACTACAGTTAGCAGTGTGCCATTGCCATCTTGGGGTTATAATGTTACACCACCAGTTGGTCTTCCTCAAGTGACTAAAGATGATATGGTGTTGAGTAAACAAGTCAATCCCTTCAATTACTGCCACAGCAGTAGTAACGAGAGCACTCCCAGGGCTTGGCCAAGTAGCAAACAGACAGATCAGCAGGGTGACCACCGCCAGCCAATTATAGAAATGCCAGATTTTGCTCAAGTATATAGCTTCATCGGAAGTGTGTTTGATCCAAATGCGACTAATCATTTACAAACACTGCAACAGATGGACCCAATAAAAGTGAAAACCGTATTGCTGTTGATGAGAAACCTCTCCTCCAATTTAAGGAGTCCTGAGTTTGAGAATGAAAGAAAGATGCTGTCAATGTATAATGCAAGCTCGGAGAGGACAAAATCCAGTAATCGTCACAGCCAATCCTTCACTGACAGATCAAAGAGTGCTATCTTATCTGCTTAA 930 0.4323 MVSLNPNPPQAFPFFDPFNMEDPNKKVRKPYTITKSRENWTDHEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTLSKVTRPLQSSSALSESSYIYRPDSSSVLRTTVSSVPLPSWGYNVTPPVGLPQVTKDDMVLSKQVNPFNYCHSSSNESTPRAWPSSKQTDQQGDHRQPIIEMPDFAQVYSFIGSVFDPNATNHLQTLQQMDPIKVKTVLLLMRNLSSNLRSPEFENERKMLSMYNASSERTKSSNRHSQSFTDRSKSAILSA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01113 309 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Spst1g01113 309 MobiDBLite consensus disorder prediction 87 112 - -
Spst1g01113 309 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Spst1g01113 309 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Spst1g01113 309 SMART sant 36 84 IPR001005 -
Spst1g01113 309 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Spst1g01113 309 Gene3D - 39 87 - -
Spst1g01113 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Spst1g01113 309 CDD SANT 39 82 IPR001005 -
Spst1g01113 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Spst1g01113 309 MobiDBLite consensus disorder prediction 283 309 - -
Spst1g01113 309 MobiDBLite consensus disorder prediction 188 212 - -
Spst1g01113 309 PANTHER SWI/SNF COMPLEX-RELATED 20 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01113 Spst-Chr1 13527574 13532605 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst1g01113 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01113 - - gmx:100791774 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01113 1 13527574 13532605 Spst1g01113 1 13527574 13532605 ECH
Spst4g01874 4 59305872 59309719 Spst1g01113 1 13527574 13532605 ECH
Spst1g01113 1 13527574 13532605 Spst4g01874 4 59305872 59309719 PCT