Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01109 ATGAAACCTTTCCTCAACACTCTTCGCTGGCTTCAATCTCGCCGTGTGCCGGAGAGTTCAAACTTTTCTTACTTTTCCGGCGACTCATTTCCTTCTTACTCTGCAGCAATGTCAATTTTCGACGGAGCTTTCATGAACACGCAACTCTCCAAGCACACTTCTATCTTCGGTCTCCGTCTCTGGGTTGTGATCGGAATCCTCATCGGCGTCTTCATTGTCTTCACCCTCTTCCTGCTCTCCCTCTGCCTCGTATCTCGACGGAACCGCCGCCGCTCCGTCGCCGGCTATAAGGTCGCCGGATCCGCCGAAGCCACGAAGGAAATACATACGATAGTGCACCTTCCCGGACCCCACATGCTCCGGCCGCCGGCGAAAGCGCCGGAGATCCAGGTGGAGATGGGGAAAGCGGAGCACCGGGTGGTTGTGCAGTGCGATAGGGTTTCGAGTGAGGAGAGTAAGGGAACGGTGGGGAGTGGGTGCGAAACAACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCTGGGGCTTGGGCCAGAGGTGTCTCATCTTGGGTGGGGGAGGTGGTACACTCTAAGGGAGCTTGAGGATGCCACTGGAGGGTTGTCTCCCGAAAACGTGGTTGGTGAAGGTGGCTATGGCATTGTCTATCATGGGGTACTCAATGATGGTACCAAAATTGCTGTCAAGAATCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCTATTGGTCGAGTACGACACAAAAATCTTGTTCGGTTGCTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTTGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGAACATACGCATGAACATTATATTGGGAACTGCAAGAGGATTGGCCTATCTTCATGAGGGTCTCGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGGCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCCGAGAACAGCTACGTCACAACTCGAGTTATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATCCTTATCATGGAGATAATCACTGGAAGAAGTCCTGTTGATTATGGTAGACCACAAGGAGAGGTTAATTTAATAGAATGGCTGAAGACTATGGTTGGTAATAGAAAATCTGAGGAAGTGGTTGATCCTAAACTCCCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCTTTGTTGATTGCTCTTCGGTGTGTCGATCCCGACGCAACAAAGAGGCCAAAAATGGGACATGTGATCCACATGCTTGAGGCAGACGACTTGTTATTCCATAATGAACACAAAACTGATGGAGAGACTTCCCGTACCTATCAGAATGAGCATAAGGACTCAAATTTAGACAAGATAACAGATGGTGTCACTGATCAAAATGAAGATGCCAGTAGTCGTAGAAATCATCATGAGGGCACTAGATGGAGATGA 1590 0.4805 MKPFLNTLRWLQSRRVPESSNFSYFSGDSFPSYSAAMSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAGYKVAGSAEATKEIHTIVHLPGPHMLRPPAKAPEIQVEMGKAEHRVVVQCDRVSSEESKGTVGSGCETTSSFGSGSVGGLGLGPEVSHLGWGRWYTLRELEDATGGLSPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYGRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNEHKTDGETSRTYQNEHKDSNLDKITDGVTDQNEDASSRRNHHEGTRWR 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01109 529 MobiDBLite consensus disorder prediction 486 529 - -
Spst1g01109 529 SMART serkin_6 201 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01109 529 CDD STKc_IRAK 207 473 - -
Spst1g01109 529 Pfam Protein kinase domain 204 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01109 529 Gene3D Transferase(Phosphotransferase) domain 1 277 490 - -
Spst1g01109 529 ProSitePatterns Protein kinases ATP-binding region signature. 207 229 IPR017441 GO:0005524
Spst1g01109 529 FunFam Putative receptor-like serine/threonine-protein kinase 277 487 - -
Spst1g01109 529 FunFam Probable serine/threonine-protein kinase At1g01540 181 276 - -
Spst1g01109 529 PANTHER OS01G0323000 PROTEIN 43 498 - -
Spst1g01109 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Spst1g01109 529 Gene3D Phosphorylase Kinase; domain 1 185 276 - -
Spst1g01109 529 ProSiteProfiles Protein kinase domain profile. 201 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01109 529 SUPERFAMILY Protein kinase-like (PK-like) 180 473 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01109 Spst-Chr1 13487128 13490754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01109 140 496 Receptor kinase-like Gene Family AT4G02010 41.240 3.20e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Spst1g01109 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01109 - - gmx:100800724 867.84