Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01105 ATGGCGAGGGAGAGAGGAGAGGCGGGGAACGAGTCCGGCGAGTCATCTCGTCGGGAGGAGGAGCTTAACCCGGTGGAGGAGGTGCAGCGAATAATCGAATCGATGGTTCAGTTCGGGGAGTACCGAAAGACGCAGCGGAGGGAGTGCCAGAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCGCTCTTGGAAGAGCTTCGCGACCTCCCACAACCCTTTCCTCAAAGCGGCGTCGCTTGGTTAACCAAATTCAAGGAAGCACTTTTGTTCGCTAAGGATTTGTTGCAATTGTGCAGCCAAGGAAGCAAGATTCACCTCTCTATGGAGAACGAGATTGTAATGGGCACGTTTCAGAAAGTGTATGAAAAATTAAGCCAAGCGTTTGATGGTGTGCCTTGTGAGGAAATGGGTATTTCGGATGAAGTCAAAGAGCAGCTTGAGCTAATGCACGTGCAACTCAGAAGAGCCAGGAGAAGAACTGATACACAGGACATAGAACTTGCAATGGATATGATGGTAGTGTTCTCTGACGAGGATGACAGAAATGCTGATAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGAGCTCTATAGTGTTGAGGATCTTAACATGGAAACAGTGGCCATTAGGAACCTTGCAGCAGAAAGAAATGGGCAACAGATTGAGAGTACTAAGCGAATAATTGATCTTCTTAACAAATTTAAACACGTTGCAGGCATGGAAGAAACCAGTGTCCTTGATGATCCTGTCGCACCCAAGACGCTAGATAGGTGCACCTCTATGGTCATCCCTCACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATTATAGCAAGTGGACAGTCATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCCAACCACAACACATGCCCAAAGACTAGGCAATGTTTGGAACACACGTCATTGGCACCAAACTGCGCATTGAAAAGCTTGATTGAAGAATGGTGTGAGAACAACAACTTCGAGCTTCCTAAAAATTACAATTCAGCTCAAGAAAGTTGTTCCGCAGTCAGCAAAGAGAAAATTCCAGGTTTGGTTCAGAGTCTATCCTCCATTCATTTAGAAGAACAGAGAAAGTCAGTGGAGACGATACGTATGATATCAAAAGAAAACGCTGAGAATAGGGTTCTGGTTGCTGAACATGGAGGAATACCACCACTAGTGCAACTCCTGTCGTATCCAGATTCGAAAATACAAGAGAATGCTGTGACAGCACTTCTAAACTTATCACTTGATGACGGTAACAAGATAATTATAGCCAAAGAAGGTGCCATTCCAGCAATCATAGATGTTTTGGAGAATGGTAGTTGTGTGGCTAAGGAAAACTCTGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGACATTACAGAGCTTATTGGTCAATTAAATGGGTTTCCCCCTTTGGTGAAATTATTGAAGAATGGAACAATCAGAGGGAAGAAAGATGCTCTCACAGCTCTTTTTAACTTAACTCTCAACCATGCAAACAAAGGCAGGGCCATTAGGGCTGGCGTTGTGACACCCTTACTTCTCTTGCTCAAGGACACAAACTTAGACCTGATTGATGAGGCTCTCTCCATTTTATTACTCCTTGTATCAAATCAAGAAGGACGACAAGAGATTGGACAACTTACTTTCATTGAAACCCTTGTTGAGTTCATGAAAAGAGGGACTCCCAAAAACAAGGAATGTGCAGCAGCAGTTCTTCTTGAGTTGTGCTTATATACCTCATCCTTTCTACTTGCAGCACTTCAGTTTGGAGTGTATCATGACTTAATAGAAATCAAACAAAATGGGACAAGTAGAGGACAGAGGAAAGCAATGGAAATCTTAGATCTCATAAGCAAGAACGAACAAATCTGA 1911 0.4369 MARERGEAGNESGESSRREEELNPVEEVQRIIESMVQFGEYRKTQRRECQNLVRRFKLMLPLLEELRDLPQPFPQSGVAWLTKFKEALLFAKDLLQLCSQGSKIHLSMENEIVMGTFQKVYEKLSQAFDGVPCEEMGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELYSVEDLNMETVAIRNLAAERNGQQIESTKRIIDLLNKFKHVAGMEETSVLDDPVAPKTLDRCTSMVIPHEFLCPITLEIMTDPVIIASGQSYERESIEKWFQSNHNTCPKTRQCLEHTSLAPNCALKSLIEEWCENNNFELPKNYNSAQESCSAVSKEKIPGLVQSLSSIHLEEQRKSVETIRMISKENAENRVLVAEHGGIPPLVQLLSYPDSKIQENAVTALLNLSLDDGNKIIIAKEGAIPAIIDVLENGSCVAKENSAATLFSLSMLDDITELIGQLNGFPPLVKLLKNGTIRGKKDALTALFNLTLNHANKGRAIRAGVVTPLLLLLKDTNLDLIDEALSILLLLVSNQEGRQEIGQLTFIETLVEFMKRGTPKNKECAAAVLLELCLYTSSFLLAALQFGVYHDLIEIKQNGTSRGQRKAMEILDLISKNEQI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01105 636 SUPERFAMILY RING/U-box 263 339 - -
Spst1g01105 636 Gene3D - 19 132 IPR036537 GO:0007166
Spst1g01105 636 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Spst1g01105 636 Pfam U-box domain 264 334 IPR003613 GO:0004842|GO:0016567
Spst1g01105 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Spst1g01105 636 SUPERFAMILY ARM repeat 356 633 IPR016024 -
Spst1g01105 636 Gene3D - 336 635 IPR011989 -
Spst1g01105 636 PANTHER U BOX DOMAIN-CONTAINING 46 630 - -
Spst1g01105 636 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Spst1g01105 636 SMART arm_5 427 467 IPR000225 GO:0005515
Spst1g01105 636 SMART arm_5 386 426 IPR000225 GO:0005515
Spst1g01105 636 SMART arm_5 550 590 IPR000225 GO:0005515
Spst1g01105 636 SMART arm_5 509 549 IPR000225 GO:0005515
Spst1g01105 636 SMART arm_5 468 508 IPR000225 GO:0005515
Spst1g01105 636 Coils Coil 139 159 - -
Spst1g01105 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515
Spst1g01105 636 FunFam RING-type E3 ubiquitin transferase 21 134 - -
Spst1g01105 636 Pfam Armadillo/beta-catenin-like repeat 472 507 IPR000225 GO:0005515
Spst1g01105 636 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Spst1g01105 636 FunFam RING-type E3 ubiquitin transferase 341 636 - -
Spst1g01105 636 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g01105 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 335 IPR013083 -
Spst1g01105 636 FunFam RING-type E3 ubiquitin transferase 264 335 - -
Spst1g01105 636 CDD RING-Ubox_PUB 265 317 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01105 Spst-Chr1 13465824 13468921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01105 25 636 U-box Gene Family AT5G42340 59.150 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01105 - - gmx:100777362 986.097