Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01097 ATGGGATTTCCGGTTGGGTATCCGGAGGTGCTGGTTCCGAAACTCTTCCTCCACGTGCTCTCTCTCCTCGCGTGGCTCCGCTCGCTCGTCACTGCGCTCTTCCGCCTCCTCCGCCTCTCCGACCTCCTCGACACCGACTCCGCCTCGCTCGCCTGGCCTCCGGAGTCCCCGTCGCCGCGCGTCCCGACGCTCTCCGCACTCCTCATCCGCGAGTTTCTTCCCGTGGCGGCGTTCTGCGACCTCTCCGGCGCTGGCGATTGTCCTCCCTCGCCGACGGGATGCGCTGTGTGTTTGAGCGAGTTCTGCGCGGAGGAGGAAATCAGGTGCATGGAGAACTGTAAGCACATGTTCCACCGCGCGTGTGTGGACCGTTGGATCGATCACGATCAGAAGACATGTCCTTTGTGTAGGACACCGTTCGTGCCCTACCACAAGCTGGAGGAGTATAACCAGCGACTATGGGCAGCTTCTGGAATTGCGCAGTTTTATCAAGAGGATTACACACCTTCTATCTGA 516 0.6047 MGFPVGYPEVLVPKLFLHVLSLLAWLRSLVTALFRLLRLSDLLDTDSASLAWPPESPSPRVPTLSALLIREFLPVAAFCDLSGAGDCPPSPTGCAVCLSEFCAEEEIRCMENCKHMFHRACVDRWIDHDQKTCPLCRTPFVPYHKLEEYNQRLWAASGIAQFYQEDYTPSI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01097 171 SMART ring_2 94 136 IPR001841 -
Spst1g01097 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 144 IPR013083 -
Spst1g01097 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 157 - -
Spst1g01097 171 Pfam Ring finger domain 94 137 IPR001841 -
Spst1g01097 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Spst1g01097 171 SUPERFAMILY RING/U-box 93 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01097 Spst-Chr1 13427689 13428204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01097 1 158 C3H Transcription Factor Family AT1G63840 45.283 4.21e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01097 K16281 - gmx:100813224 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01097 1 13427689 13428204 Spst1g01097 1 13427689 13428204 ECH
Spst1g01097 1 13427689 13428204 Spst4g01850 4 58827693 58828121 PCT