Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01095 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAATCTAATCTGCGAGGGGCACCAGTGTATTACTATTGCCCACCGACTTTTGAAGAGCGTGAGTCTTTAACATCTAATGATGGCACAAATGCTTCACTCAATGCTGGATATCTGGTTGGTTTGAACATAGAAGCATCCATGCCTGATACTTTTCAGCCCCCTCCGGTCCCTCTTCCTTATGACACAGTCTTGGGAGGCTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATCACACGTGAAGATGTTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCTCTCCAACATCTCCAAGGAAGGAAGAATTATCAAAATCAAATGAAACTAAATTATTAGTGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 555 0.3982 MGGCCCSARKSNLRGAPVYYYCPPTFEERESLTSNDGTNASLNAGYLVGLNIEASMPDTFQPPPVPLPYDTVLGGSASTYSESGRETVSSFETLITREDVEESNCKAQTNSSPTSPRKEELSKSNETKLLVMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01095 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 183 IPR013083 -
Spst1g01095 184 SUPERFAMILY RING/U-box 131 182 - -
Spst1g01095 184 SMART ring_2 138 178 IPR001841 -
Spst1g01095 184 CDD RING-H2_AIRP1-like 134 182 - -
Spst1g01095 184 Pfam Ring finger domain 137 178 IPR001841 -
Spst1g01095 184 MobiDBLite consensus disorder prediction 101 125 - -
Spst1g01095 184 FunFam Putative E3 ubiquitin-protein ligase RHB1A 114 183 - -
Spst1g01095 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Spst1g01095 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01095 Spst-Chr1 13380983 13383347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01095 1 184 C3H Transcription Factor Family AT4G00335 58.065 4.51e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01095 - - gmx:100803758 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01095 1 13380983 13383347 Spst1g01095 1 13380983 13383347 ECH
Spst1g01095 1 13380983 13383347 Spst4g01841 4 58761139 58763014 PCT