Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01093 ATGGGTAACGGGGAACCGTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGCTATGATGCTGTTTGTAAGAACAGTTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGGGTGAAGGTTGGTTCCTCTGTGAAACTTGTTTACAGCAAACACTTGAGTACTCTAGAGACATGTTTGAATGATGTTGCTGGTCTTAAGTTTGTTGAGTGTGGATTAGAAGATGGTAGAGTTAAGTTTCACAAGCATTTGACAGAGGCACACACTGAATCCATGGTAGATGATTCTGGCGAGGCAGGAGATGAACTTGATAGGAGGGAGTATGGCTGTCCGGATGGAAGGAAGTTGTATGGTTATAATAGAGTCAAGAGTGTGAAATCAGATTTCAATGGGGCTGAACATGAGAGTGCATATGAATATCTAGATGTGAGTAAATCATGTGGTAGTAATAGTGTGAAGGAAAAAAATTCAGATTCTAACGGAGGTGAATTTGATAATGTATGTGACTATCTGGATGGGAGAAATTCATGTGGTACTAACAGGGGGAACAGGGTGAAAGTGGTGAATCCCGAGTCTAATGTGACCAAGAAAACTTGGAGTTCAGGATTTGTTGATTTGGACATGCTAGACGATCATGAGACTGGTGAGCCTATTACAGTAAAATTTTGTGGCTTTAATACTGAAATGGATATACTAGAAGAGTTTGATGAGAACAAAATATTAACTGTGGATGCATCTGATGCAGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAGAGCTGTGACGATGATAGTGATGAAGTCTTGATATTGGATCCTTCTTGTGTTGACAAAAAGAAATTTGGTCGAAAGAGGAAGAGAGAGTCTACCTCAGAAATGCTAACGTGGGTTACTACTATTGCCAAAAATCCTTGTCATCCTGCAGTTGGTTCAATTCCTGAAAAGTCCAGGTGGAAGTCCTACAGTAGTAAGGAGATCTGGAAGCAGACTTTGTTGCTTCGCGAAGCTGTCTTTTTGAAGAAAGATTTTGAGACAATAAGTGAACAACTTACTTGGCAGAGTCAGAAAATGCATCCTTCCATGTATGATGATCGCAGTGGGACAATGTACAATTTTAGACAGAGGTTGAGATGTGACAAAAGAATTTTATGGGGAAAATCTACATCAGATGGAGTCTCCTCATCTTCATCTAGAGGAAGAACACATAGAGGTTTGCTAAGAACCCAAAACATTCGTGCTGAAGATCGGGCAGCAGTCAAAAATTTACTTGAGTCTGGTATTACACTCTCAAGTGTTGATAAATGTGCTCGAGTGCACATTCCTGTGGGACCAAACCATCAAGCTGAAGTACCAAAATGGACTGGTATGACTTGTGAGAGTGATTCTAAATGGTTGGGGACCAAAATATGGCCTCCAAAGTTTGAAATTTCCAAATGGCGTATTGTTGAAAGGGACCCTATTGGAAAGGGAAGGCAAGATTCATGTGGCTGCCGTATACAAGGTTCTGTTGAGTGTGTACGGTTTCATGTTGCTGAGAAAAGGTGTAAAGTTAAGATGGAACTGGGTGAGGCTTTTTACCAATGGAATTTAGATAAGGTAGGTGAAGAAGTTAGGAGTTCTTGGACAGAGCAAGATGAGAAAAAGTTCAAAGATGTGGTTAAATCAAATCCTGCATCACTTGATAAACGCTTTTGGGATCATCTCTTTAAGACATTTTCTAAGAAGAGTAGAGAAGATTTGGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACACCAGATAACATTGACAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTGTTTGGACATCAAGCATCAAAGTCACATAGCATCACTTTGTTATCCCCAAAAAAGTCCACTGGAAAAATTTGTAAGTGA 1947 0.4011 MGNGEPLDLYKLFMVVKKKGGYDAVCKNSLWDLVGEEYGLGVKVGSSVKLVYSKHLSTLETCLNDVAGLKFVECGLEDGRVKFHKHLTEAHTESMVDDSGEAGDELDRREYGCPDGRKLYGYNRVKSVKSDFNGAEHESAYEYLDVSKSCGSNSVKEKNSDSNGGEFDNVCDYLDGRNSCGTNRGNRVKVVNPESNVTKKTWSSGFVDLDMLDDHETGEPITVKFCGFNTEMDILEEFDENKILTVDASDAESDMLRLSDGSKSCDDDSDEVLILDPSCVDKKKFGRKRKRESTSEMLTWVTTIAKNPCHPAVGSIPEKSRWKSYSSKEIWKQTLLLREAVFLKKDFETISEQLTWQSQKMHPSMYDDRSGTMYNFRQRLRCDKRILWGKSTSDGVSSSSSRGRTHRGLLRTQNIRAEDRAAVKNLLESGITLSSVDKCARVHIPVGPNHQAEVPKWTGMTCESDSKWLGTKIWPPKFEISKWRIVERDPIGKGRQDSCGCRIQGSVECVRFHVAEKRCKVKMELGEAFYQWNLDKVGEEVRSSWTEQDEKKFKDVVKSNPASLDKRFWDHLFKTFSKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQASKSHSITLLSPKKSTGKICK 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01093 648 CDD ARID 3 60 - -
Spst1g01093 648 CDD SANT 544 592 IPR001005 -
Spst1g01093 648 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 642 - -
Spst1g01093 648 Pfam ARID/BRIGHT DNA binding domain 3 59 IPR001606 GO:0003677
Spst1g01093 648 SMART ELM2_2 444 496 IPR000949 -
Spst1g01093 648 SMART bright_3 1 65 IPR001606 GO:0003677
Spst1g01093 648 ProSiteProfiles ELM2 domain profile. 442 593 IPR000949 -
Spst1g01093 648 ProSiteProfiles ARID domain profile. 1 64 IPR001606 GO:0003677
Spst1g01093 648 Gene3D - 1 68 IPR036431 GO:0003677
Spst1g01093 648 SUPERFAMILY ARID-like 3 71 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01093 Spst-Chr1 13349632 13352902 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst1g01093 ARID 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01093 - - vun:114182925 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01093 1 13349632 13352902 Spst1g01093 1 13349632 13352902 ECH
Spst1g01093 1 13349632 13352902 Spst4g01839 4 58740659 58743953 PCT