LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g01086	ATGAGACTGAGTTTCTTAGAAATCCTAGAGCACAACGATGGAGCACACTACAATGACATAGTGTTCTGCTTTCCTCTTAGAGCCATTGTTATCTCTGTTGGATTGCTAGCATGCCACAAGACTCTTTATGTTCTCTGTCACTTTTCTTTTCTTGAGTTCAATCTAGCAATGATAGTGATGGATTTCATAAGTCCAGTGTTGGAGATCATAATTCGCTTGTGGGACTGTTGTGCCTTCGTCCGTGACTATGAAGAGAACCTTTCTTGTTTGAGGGACGTGGCATCTGACCTCCAAGCCCTTTGGGTTGATGTGAGTGTGAAGGTCCAACTGGCTGAGGCACGGCACCAGAGACGTCTGAATGAAGTGAATGATTGGTTGGAGAAAGTTGAAGCCATGCAAAGAGAAGTTCAAGCTATTCAAGAGAAAGTTGCTCATGTTCAAGAAACACGTAGCAGATGTTCGGGAAATTTTCCAACAAGCTGCAGGATGGGAAGGATTGTAACTCGAAAAATAGGTGAGGTTGGTCAACTTATTGATAAAGGACATTTTGATGTAGTGGCTCAGGAAATGCCACATGCTTTGGTAGATGAAATCCCTCTAGAGGTCACAATAGGTCTAGAATCAACTTTTGATGAACTTGGTGCATGTTTTGATGATAATCATGTGGGAGTTATTGGCTTGTTTGGCATGGGGGGTGTAGGAAAGACAACCCTGCTCAAAAAGTTCAACAATGAGTTCCTTCCCACCAAATTTTATGATGTAGTTATTTGGGTTGTGGTGTCTAAAGAAGCAGATGTAGGGAGTGTTCAACAAAGCATAGGGAACAAATTAAATGTTCCTGTTGGTAAATGGGATGGTAAGACCATTGATGAGAGAGCTATTGTTTTATACAACTTTTTGAAAAGGAAGAAGTTTGTGTTACTGCTTGATGATTTATGGGAGCGTATAAATCTTCTGAAGTTGGGGATTCCTCTTCCTGATATGGAAAACGGATCTAAAGTGATATTCACTACAAGGTCCATGGAGGTTTGCAGGAACATGGAAGCCAACAGATGCATCAAAGTAGAATGTTTAGCACCAAAGGAAGCATTTGAATTGTTCAGAGAGAAAGTGGGTGAAGAAACTCTCAACTCTCATCCTGAAATATTTCATCTGGCTCAAATTGTGGCCAAGGAGTGTGAGGGACTTCCACTGGCTCTTATCACTGTTGGAAGATCTATGGCTCGAAAGACTCTCCCTGAATGGAAACGAGCAGCACGGACTTTAAAGATTTATCCATCAAGATTTTCAGGTATGGTTGACTATGTCTATTGTTTGCTTGAGTTTAGCTATGACAGTTTGCCAAGTGCTATACACAAGTCTTGTTTCTTGTACTGTTCCATCTTCCCTGAAGACTACGACATTAGAAAAGATGAACTCATTCAACTGTGGATTGGGCAAGGTCTTTTAGCTGAATTTGGTGATGATGTCTATGAAGCGCGTAACCAAGGAGAAGAAATCATAGCAAGCTTGAAGTTTGCTTGTTTGTTGGAGGACAGTGAGAGACAAAATAGGATTAAGATGCATGATGTGATCAGAGATATGGCTTTGTGGCTAGCTTGTGATCAAGGATCCAACACCAGGTTTTTGGTGAAAGACAGCAGTTCTATTGAAGCATATAATCCTGCAAAGTGGAAAGAAGTAGAGATAGTATCACTGTGGCGACATAGCATTCAAAACCTCTCAGGAAAACCAGATTGCTCAAGTCTATTGACTATGCTTGTTAGAAACACCGAGCTAACCAACTTTCCTGATGAGATCTTTCTGACTGCAAACCATCTTAGAGTGTTAGACATATCAGGTAATAAAAGAGTAAAAAAATTACCTTCAAGTATTGGGAAGTTAGTTAATTTGCAGCATTTGGATCTATCAGGTACTGATATACAGGAATTGCCAAGGGAGCTCCAGAACTTGAAAAAACTGAGGTGCCTGCTGCTAAATTATATTTGTAATAGGCTTGTCTTCCCAAGGAGTTTGATATCAAGTTTGTTGTCATTGCAAGTGTTTAGCAAATTACCATGGGAAGATCAATTTATTCTTCCCGACTTGGGGGAACCCGAGGAAACTGTCTTGTTGCAAGAACTGGAATGCTTGGAATGCCTTCAAGACGTAAGCATTGCTCTATTTTGCTTTTCTTCTATGCAAGTATTACTGAATTCTCCGAAATTGCAAAGATGCATTAGACATCTGAGAGTAATTTCTCCTTTCAATTCAATGCCACATGTTGTATTATTCTCATTATTGAGAAATATGCAGCATCTAGAGGTGTTGTCAATGTCAATTTCTTCATCTCCAAGGTTAGACCATGTCAGGAAAAAGGAGTCTCCATCACAGGGTTCTATGATTGAGTTCATTCCCATGAGTTCTAAACTTACTGAGCATGGTTACATCGTTGCCCTTCGGGAGTTATCTCTTGAAGGGTGTGGCATGTCCAACTTGAATTGGCTCACTCTTGCTCCAAGCCTTCAACTCCTTAAAATATACAATTGTTCCTACTTGGAAGAAGTCATAGGTGAAGAATTTGAACATGCAGAAAATGTTTTTTCAAGTCTTGAAATTGTTGATCTAGATTCTCTACCAAAATTAAGGAGCATATGCTCAAAAGTATTACAATTTCCTTGTCTTAAGGAGATCTGTGTAGCAGATTGTCCGCGGCTGATAAAACTCCCTTTTGATTCCAACAGTGCAAAGAACAGTCTGGAGCACATTAATGGACAGAAAAAGTGGTGGCGTAAACTGCAGTGGGAAGATGAAGCCACAAGGGATCACTTTGGTTCAAAATATGTGCCTTTACGTAAAATTCGCCAAATACATTGA	2856	0.4016	MRLSFLEILEHNDGAHYNDIVFCFPLRAIVISVGLLACHKTLYVLCHFSFLEFNLAMIVMDFISPVLEIIIRLWDCCAFVRDYEENLSCLRDVASDLQALWVDVSVKVQLAEARHQRRLNEVNDWLEKVEAMQREVQAIQEKVAHVQETRSRCSGNFPTSCRMGRIVTRKIGEVGQLIDKGHFDVVAQEMPHALVDEIPLEVTIGLESTFDELGACFDDNHVGVIGLFGMGGVGKTTLLKKFNNEFLPTKFYDVVIWVVVSKEADVGSVQQSIGNKLNVPVGKWDGKTIDERAIVLYNFLKRKKFVLLLDDLWERINLLKLGIPLPDMENGSKVIFTTRSMEVCRNMEANRCIKVECLAPKEAFELFREKVGEETLNSHPEIFHLAQIVAKECEGLPLALITVGRSMARKTLPEWKRAARTLKIYPSRFSGMVDYVYCLLEFSYDSLPSAIHKSCFLYCSIFPEDYDIRKDELIQLWIGQGLLAEFGDDVYEARNQGEEIIASLKFACLLEDSERQNRIKMHDVIRDMALWLACDQGSNTRFLVKDSSSIEAYNPAKWKEVEIVSLWRHSIQNLSGKPDCSSLLTMLVRNTELTNFPDEIFLTANHLRVLDISGNKRVKKLPSSIGKLVNLQHLDLSGTDIQELPRELQNLKKLRCLLLNYICNRLVFPRSLISSLLSLQVFSKLPWEDQFILPDLGEPEETVLLQELECLECLQDVSIALFCFSSMQVLLNSPKLQRCIRHLRVISPFNSMPHVVLFSLLRNMQHLEVLSMSISSSPRLDHVRKKESPSQGSMIEFIPMSSKLTEHGYIVALRELSLEGCGMSNLNWLTLAPSLQLLKIYNCSYLEEVIGEEFEHAENVFSSLEIVDLDSLPKLRSICSKVLQFPCLKEICVADCPRLIKLPFDSNSAKNSLEHINGQKKWWRKLQWEDEATRDHFGSKYVPLRKIRQIH	951

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g01086	951	ProSiteProfiles	Leucine-rich repeat profile.	630	652	IPR001611	GO:0005515
	Spst1g01086	951	Coils	Coil	80	100	-	-
	Spst1g01086	951	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	198	459	IPR027417	-
	Spst1g01086	951	Gene3D	Ribonuclease Inhibitor	545	925	IPR032675	-
	Spst1g01086	951	SUPERFAMILY	L domain-like	520	915	-	-
	Spst1g01086	951	FunFam	Probable disease resistance protein At1g61300	186	351	-	-
	Spst1g01086	951	FunFam	Probable disease resistance protein At1g63360	444	531	-	-
	Spst1g01086	951	Pfam	NB-ARC domain	220	445	IPR002182	GO:0043531
	Spst1g01086	951	Coils	Coil	122	149	-	-
	Spst1g01086	951	FunFam	Probable disease resistance protein At5g66910	357	443	-	-
	Spst1g01086	951	PRINTS	Disease resistance protein signature	299	313	-	-
	Spst1g01086	951	PRINTS	Disease resistance protein signature	224	239	-	-
	Spst1g01086	951	PRINTS	Disease resistance protein signature	602	618	-	-
	Spst1g01086	951	PRINTS	Disease resistance protein signature	393	407	-	-
	Spst1g01086	951	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	102	915	-	-
	Spst1g01086	951	Gene3D	-	358	443	IPR042197	-
	Spst1g01086	951	Gene3D	-	187	357	IPR027417	-
	Spst1g01086	951	Pfam	Leucine rich repeat	585	641	IPR001611	GO:0005515
	Spst1g01086	951	Gene3D	-	444	530	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g01086	Spst-Chr1	13284962	13288093	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g01086	225	529	WRKY Transcription Factor Family	AT5G45050	25.714	2.01e-08	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g01086	-		K13459	vra:106758404	1575.07