Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01077 ATGGCTGTGGTGAGTCCTGTGCCTGCAACAACACAAAGGATGGGTTCTGTGAGGTCACCTTCTGACGTTGGTGGGGAAATTTTTGAGGAGCCTAATCCAGGTGTGGTTGATGAGCCAATCTATGTTGCTGTGACAAAAGAAGTGAAGGAAAGCAAATTAAATCTGATATGGGCAATACAGCACTCCGGTGGAAAGAGAATTTGCATTCTTTATGTTCATGTTCGTGCATCAATGATCCCCCTACCTGAACTAACTCAACTTGGGCTCAGTGTAACTGTTTGTAATACAATGGATTTGACTCTTCTAAAGGTGGTGCACTCTAAAGTGCACTCATTATTGCCAATTAGAAATGATATGACGTTGTTCGGTAGCAGTTGTCAAAATGACCACTTGTTGTATTGGTTTATTGCTGACGTAGCTGTTATCAGGAAACAAATGGGAGGTAGATTCCCTGTAAGTGCACTAAAAGAGGAGCAGGTTCAATCATATTGGGAAGAAGAAAGGCAAGGCATGCGTAGGACTCTGGACGAATATCTTCGAATCTGTCAACGGATGGGGGTGCGAGCAGAGAAACTGGCTATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAGCTTATATCTCAACACAACATCCAAAAGCTTGTAATGGGAGCAGCTTCTGATAAGTACTATAATAGGAGAATGGTGGACCTTAGATCTAGGAAAGCTATCTATGTGAGTAAACAAGCTCCACCTTCTTGTCACATACAGTTTGTCTGCAAAGGGCACCTTATACACTCAAGGGATCTCAGTTTGGAGGAAGGTAATGCAGAGGTTGCTTCTCCTTTGGTGCAGCAAGTGCCTGCACCAAACTCTGTGAGAACTTTGAGATCTCAATCTGTCACACTGGGGCAAGATCGCGGAGCAAATCTAACTAATCATGCTCTAGATTTGTTACGTAGAGTAAGGTCTGCCAATGAACATGGAGCAAGTTTTGTGGCTGTTTCTTCTCCAGAAGAAAGTGAAGGGTTTTCAACTCCACGGGACAGGATGGGTACAAAAGTAAGTTCTGATGAATCAGATAGGCTGTCAAGGATGAGTCCTTCCAGTTTGTCAACATGCTCTGATAGTACAGTTGAGCTAGCTTTGGCCCCAAGATTGATTACTGAAAGCAGTGAGAATGCACTAGAGTTGACTTTGAGTCAGCTGGTTATGGAGGATCTCCATCATTCATCCCCTTCTAGTACACTGGATGGTGGAATGGATGATACTATCTACGACCAGCTTCAACAGGCTATGGCTGAGGCTGAGAATGCTTCGCTAAATGCGTATCAGGAAACTGTAAGGCGTAGGAAAGCTGAAAAAGATGCATTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACCTGAGGAAAATGGCAGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATGTGAAGGGGCTGAGAGACAAGGTTAAGGAAGAACTCCGCCTTGCCCTAGATCAGAAGGCAACTCTAGAGAGTCAAATTTCATCATCTGAACTTGTCATAAAGGAGCTGGAGCAGAAGATCGTATCTGCTGTGGATCTGTTACAAAGCTACAAGAATGAACGTGAGGAATTGCAGATGCAGTGCGATAATGCATTGAGAGAAGCTGAAGAGTTGAGGAAAAAGCAAGGAGAGGCCTCATGCACCCATGTGTCTCAATTTTTCTCTGAATTCTCTTTTTCAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCTTAAAAATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCTTGAGATACACTGAGGTGGCTATAAAAAGGTTGCACTCCAACAGCATGCAAGGACCCTTGGAATTTCAACAGGAGGTTGATGTGTTGAGCAAGCTAAGGCATCCCAATCTTGTCACACTCATAGGAGCCTGCCCAGAATCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGTCTCGAAGACCGCCTTGCCTGCAAGGATAACACCTCTCCGTTGTCGTGGCAAACTCGAATTCGCATTGCTGCTGAACTATGCTCTGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCCTCCAACATTCTTCTCGATGCAAACCTTATTAGCAAGCTTAGCGACTTTGGAATCTGTCGAATATTATCAAACTTCGAGAGTTCTAGTACCAATTCTACACAGTTTTGGAGAACTGACCCAAAGGGAACATTTGTCTACATGGATCCTGAATTCCTTGCCTCAGGGGAACTTACTCCAAAGTCAGATGTTTATTCATTTGGAATTATATTGTTGAGATTATTGACTGGGAGACCAGCCTTGGGAATAATAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAAGCTGAACAATTGGCTCGCTTGGCTTTGAGATGTTGTGATATGAATCGAAAGAACCGGCCAGATCTTTATTCAGATGTCTGGAGGGTCCTTGAGGCAATGAGAGTTTCTTCTGGAGGCACAAACACCTTTGGACTAAGTTCTGAAGAGCTCTCACAACCTCCATCATATTTTATTTGCCCGATCTTCCAGGAAGTCATGCGAGACCCACATGTGGCTGCAGATGGTTTTACGTATGAAGCTGAAGCTATACGAGGATGGCTTGATGGTGGTAACGACAACTCACCAATGACTAATAGTAAGCTTGCACATCACAATCTTGTTGCCAATCGTGCTCTTCGCTCTGCAATCCAGGATTGGCTTCAAAACCACTGA 2847 0.4331 MAVVSPVPATTQRMGSVRSPSDVGGEIFEEPNPGVVDEPIYVAVTKEVKESKLNLIWAIQHSGGKRICILYVHVRASMIPLPELTQLGLSVTVCNTMDLTLLKVVHSKVHSLLPIRNDMTLFGSSCQNDHLLYWFIADVAVIRKQMGGRFPVSALKEEQVQSYWEEERQGMRRTLDEYLRICQRMGVRAEKLAIEMDSIEKGILELISQHNIQKLVMGAASDKYYNRRMVDLRSRKAIYVSKQAPPSCHIQFVCKGHLIHSRDLSLEEGNAEVASPLVQQVPAPNSVRTLRSQSVTLGQDRGANLTNHALDLLRRVRSANEHGASFVAVSSPEESEGFSTPRDRMGTKVSSDESDRLSRMSPSSLSTCSDSTVELALAPRLITESSENALELTLSQLVMEDLHHSSPSSTLDGGMDDTIYDQLQQAMAEAENASLNAYQETVRRRKAEKDAFEAIRKAKASESLYTEELNLRKMAEEELRKEKEELENVKGLRDKVKEELRLALDQKATLESQISSSELVIKELEQKIVSAVDLLQSYKNEREELQMQCDNALREAEELRKKQGEASCTHVSQFFSEFSFSEIKEATSNFNPSLKIGEGGYGSIFKGILRYTEVAIKRLHSNSMQGPLEFQQEVDVLSKLRHPNLVTLIGACPESWALVYEYLPNGSLEDRLACKDNTSPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNFESSSTNSTQFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGIIKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKNRPDLYSDVWRVLEAMRVSSGGTNTFGLSSEELSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNSKLAHHNLVANRALRSAIQDWLQNH 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01077 948 SMART serkin_6 590 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01077 948 Gene3D Transferase(Phosphotransferase) domain 1 663 867 - -
Spst1g01077 948 PANTHER OS02G0152300 PROTEIN 40 943 - -
Spst1g01077 948 ProSitePatterns Protein kinases ATP-binding region signature. 596 617 IPR017441 GO:0005524
Spst1g01077 948 Gene3D Phosphorylase Kinase; domain 1 560 662 - -
Spst1g01077 948 CDD RING-Ubox_WDSUB1-like 879 934 - -
Spst1g01077 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Spst1g01077 948 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g01077 948 Coils Coil 465 562 - -
Spst1g01077 948 SUPERFAMILY Protein kinase-like (PK-like) 568 854 IPR011009 -
Spst1g01077 948 SMART Ubox_2 881 944 IPR003613 GO:0004842|GO:0016567
Spst1g01077 948 ProSiteProfiles U-box domain profile. 877 948 IPR003613 GO:0004842|GO:0016567
Spst1g01077 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 877 948 IPR013083 -
Spst1g01077 948 SUPERFAMILY RING/U-box 872 947 - -
Spst1g01077 948 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 153 221 - -
Spst1g01077 948 CDD STK_N 39 256 - -
Spst1g01077 948 MobiDBLite consensus disorder prediction 337 355 - -
Spst1g01077 948 MobiDBLite consensus disorder prediction 325 365 - -
Spst1g01077 948 ProSiteProfiles Protein kinase domain profile. 590 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01077 948 Pfam Protein kinase domain 594 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g01077 948 Pfam U-box domain 879 948 IPR003613 GO:0004842|GO:0016567
Spst1g01077 948 FunFam receptor-like protein kinase FERONIA 554 662 - -
Spst1g01077 948 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01077 Spst-Chr1 13208048 13216179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01077 146 948 U-box Gene Family AT2G45910 54.919 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Spst1g01077 Pkinase 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01077 - - gmx:100807515 1380.93