Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01072 ATGTCTGTGTTTGCCAAGAGCGTTCTCTTATTGTTAGTGTTCACGTTTGCATCAGCGAAACGCATCACTGTAAGGATTATAAATACTTTGGAGGGAAAAGAAGATCTACACCTTCACTGCAGATCTAAACAGGATGATCTTGGACTGCATCTTCTCCGTCTGTCAGCAAAAAATGGTATGGCACTTGTTAAGGTCACAAATTCATTGGATGGAAATTTGGACTTAGCCGTTTTTTGCGAACGTCTTGCAATTGAACCCTACGTTATTCGGCCAGGTACTTACTATGACTTAATTGACACTCATGCTAACAACGCATTTGAAATAATGCCACTATTCTTTTGTTTCTTCCAATGGAAAGGTGCATTTCACAACTTTGATTTGTGTTTGGCAAGTGGTGAGGATGGAGATTGCCAACAGTGCCATTGGTTGATAACTGAAGATGGACCATGCAGGTACCAAGGTGCCAATAAAACTTGTGTTAGCTGGACATAG 492 0.4085 MSVFAKSVLLLLVFTFASAKRITVRIINTLEGKEDLHLHCRSKQDDLGLHLLRLSAKNGMALVKVTNSLDGNLDLAVFCERLAIEPYVIRPGTYYDLIDTHANNAFEIMPLFFCFFQWKGAFHNFDLCLASGEDGDCQQCHWLITEDGPCRYQGANKTCVSWT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01072 163 PANTHER - 63 153 IPR010264 -
Spst1g01072 163 Pfam Plant self-incompatibility protein S1 23 54 IPR010264 -
Spst1g01072 163 Pfam Plant self-incompatibility protein S1 63 162 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01072 Spst-Chr1 13094508 13095949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01072 21 163 Carbohydrate Esterase AT3G16970 29.333 4.88e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01072 - - pvu:PHAVU_008G063300g 124.02