Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01066 ATGGCCACTGATATGCAGAGACTTGTTGGAACGAGTGAGGATGATGAAGAAATTGGAATGGATGTGAAAGATGAGGATGATGAGGATGATGATTATGAGGAAAATGGAGGTGAGCAGGGAAATGCTTCAGGGATGGTGGAGATTGATGGTGGGAACGAGATAAGAACTGCCAGTGGTGACAACAGATTTCAGCAGCATCAGCAGTTTCATGAACAAGTAGGCACCCCAGGTGGAGGTACTCGAAGATCTAGGCCGGTGGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCAATCACTGCAAGGATCTTGGCAGGGCTTCGCAGGCATGGGAACTACAATCTAAGAGTGAGGGCTGACATAAATGATGTCATTGCTGCACTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAAATCTCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTGTAACTTCATCATCCTCCCATGTGGCTTCACAACAAATTCCACCTGCTTCTCTTAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTATAGTGCATGTCAATCAAAAGGTGTTTTTATGCCAACTCCTTCTCCTTATGATCTATCCTCAACTTCCCGATCTCAAACATCTATTGGGGGGGATGGAGAAGCACAAAGAGACAATCATCCTCTGATTGGTGGTTCAATGGGTAATGCTGATGAGAAGCAGATTGCTGACTTGCCCCCCAGATTGTCAGAGCGTGATATGGCTGGTACTCCATATGTTCCAGTTTATGTGATGCTACCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGATTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAGGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAGATTAAGCTTAAGCTGCAGGTTGTGATGTCATTTCACGAATGTGGAGGGAATGTTGGTGATGATGTTTGTATTCCATTGCCCCATTGGGTAGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGATGATGGTTTAATCTCCATGATTGAAATTGGGCTGGGTCCATGTGGAGAGTTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCCGGTATCGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAGAGTCTTAGGAAAGCAGCAGAAGCAAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGCTACCTACAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGCATTACTGCAAAGTTATCGGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTGCTGAATTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGGTATGCTGCAATTATGACAATGTTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGACTTGCACACACTAAACCAACACGAGGGCTTTCCAGTGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCAGGTTGGGATGTTGACCTACCAGTCACCAGTCAGAATGGATTCTCTTGCCTAAACAGAGTAAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCCTTTACTTACCTGAGGCTTGGTTCACTACTTATGGAACGACAAAACTTGGTAGAGTTTGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGATTGTTATTTGCTGCGGCACATATTTTGCTCGAAACCGTTCAATTCAATCACTGGAATGGCGCAGGAAGAAGTGTTCGAGTTCCTCGGGAACGTTCCTCTGCTACAGAGGCTTCCTGGCTCATCTGTACGGAAGATATCGGAGCTTGTGGTTCCCAAATATTATGAGCCGAGAGAATATGTTGTTCGTGAGGGAGAACGTGGGGATGGTCTTTACTTCATCTGGGAGGGAGAGGCTGAGGTTCTTTGCTCTGTTAGTGCTGATGAAGATGATCATCCAGAGTTTCATTTGAAAAGATATGACTATTTTGGTTTTGGTTTATCAAATGAAGTTCATCATGCTGATGTCATAGCTTTGACGAAGCTATCATGCTTAGTGCTGCCCCATAAGCATTCAGCATTGCTTCAACCAAAGTCTATCTGGAGCGCAGAAAAATCTATTGATACATGCTCACCTGTGGAGCACATATTGCATTTGGAACCTATAGAGGTAGATATTTTCCGAGGAATCACTCCTCCAGATGCTCCAAAATTTGGTAAAGTATTTGGTGGGCAAATAGTTGGTCAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTTTATTTTCTTCTTGTGGGTGATTTTAACATACCCATTATATATCAAGTTAGCCGTCTGCGTGATGGGAAGAGTTTTGCTACAAGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTTGCTTCATTTCATAAGGAGGAATTAGGGTTTCACCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAAATAAGCTTTTGTCGTTGGAAGAGCTTCGGGAGCTACGTCTTACTGACCCTCGCCTTCCAAGAACTTACCGGAACAAGGTTGCTTCAGTTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCCAGAACATCAACAAATCAGACCAAATCTCCTCCTAGTTTGCGATACTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGTGTGGTAGCATTTACTTCAGATCTAATCTTTCTTCAGGTGAGTTTGAATCCCAACCGTAGGAAGGGCATGAAGGCACGTGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCTGATGACTGGGTGCTATTTGTGATCTGTAGCCCTACTTCCTCTAATGCCCGTGGCTATGTTACTGGGCAAATGTTCAATCAAAAGGGAGAGGTTTTCCCGCTTGGGAACTTGCAGCTTCTTGTTTCAGTGGTTCAAGAAGGTCTAATGAGGGAAGTTATTTCTGCAAATTCAGGCATCAAATCTAATATAGTGAACCCTCTAATAGGTGGTGCACCTATACAACATCACATAAATACACGCATGTCTGCTATCATTGAGATGTTGTTGGGTATCCAATTGCGTTTTGATTTGGCTGAGTTTGTCTGGGAGGGTTTTGAAGTGCATTATTCATATCACACTTTGTGTTTGGGAGGAGAGCACATTAAACAGAATAACAAATACTTGGGACAATTCTCGGCCCATTCGGGAAATATCAACATATCAGAGGCAAATGGCTCATGGGCCGTGATAGTCCTTGAACCATTTGGTTTCGGTCGCAAGCTTACTCGACAAACGTTTGTTGATGTGGTAGAAGAAGATACATCATCAGTTACAGTTTGTAGTGTAAGAGAGATGGAGTTGAACATGAAAGTGTTGGTGAAGCGTGCTGTGACAAATGCTTCTGCACAAAATCAATTCCTCCACAGTGCAGTTGTCGAGATATTCGAGAAACATGTCACTCTGTATGCAAAACTTGTGCTTGCACGCGCTCAATTGCTCCGCAGTGTCGTTGCATGGACTTTACCGATTTCTGTTATAAACCATGTAACCCCAATGGAACCCAAGCTCACTGAGAATGAACATTTTCTTGTCAACAAAATCACTAGGCTTTGCTTTCATCTTTGCCAATAA 4113 0.4354 MATDMQRLVGTSEDDEEIGMDVKDEDDEDDDYEENGGEQGNASGMVEIDGGNEIRTASGDNRFQQHQQFHEQVGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGQKPAGGNSTIVTSSSSHVASQQIPPASLRGVASGYRSPLEYSACQSKGVFMPTPSPYDLSSTSRSQTSIGGDGEAQRDNHPLIGGSMGNADEKQIADLPPRLSERDMAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVREIKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFDDGLISMIEIGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAATYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCITAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKINGVSLNIPCVDLHTLNQHEGFPVTFADPEGLVWQVLNAGWDVDLPVTSQNGFSCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLGSLLMERQNLVEFERFVKRMHGEAVLDLQDCYLLRHIFCSKPFNSITGMAQEEVFEFLGNVPLLQRLPGSSVRKISELVVPKYYEPREYVVREGERGDGLYFIWEGEAEVLCSVSADEDDHPEFHLKRYDYFGFGLSNEVHHADVIALTKLSCLVLPHKHSALLQPKSIWSAEKSIDTCSPVEHILHLEPIEVDIFRGITPPDAPKFGKVFGGQIVGQALAAASKSVDCLKVVHSLHVYFLLVGDFNIPIIYQVSRLRDGKSFATRKVDAIQKGNVIFTLLASFHKEELGFHHQEVSIPSVPAPNKLLSLEELRELRLTDPRLPRTYRNKVASVEFIPWPIEIRFCEPRTSTNQTKSPPSLRYWFRARGKLSDDQALHRCVVAFTSDLIFLQVSLNPNRRKGMKARAVSLDHSMWFHRPLRADDWVLFVICSPTSSNARGYVTGQMFNQKGEVFPLGNLQLLVSVVQEGLMREVISANSGIKSNIVNPLIGGAPIQHHINTRMSAIIEMLLGIQLRFDLAEFVWEGFEVHYSYHTLCLGGEHIKQNNKYLGQFSAHSGNINISEANGSWAVIVLEPFGFGRKLTRQTFVDVVEEDTSSVTVCSVREMELNMKVLVKRAVTNASAQNQFLHSAVVEIFEKHVTLYAKLVLARAQLLRSVVAWTLPISVINHVTPMEPKLTENEHFLVNKITRLCFHLCQ 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01066 1370 Pfam Glycosyl hydrolase family 14 268 687 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 MobiDBLite consensus disorder prediction 17 36 - -
Spst1g01066 1370 CDD CAP_ED 735 832 IPR000595 -
Spst1g01066 1370 SUPERFAMILY (Trans)glycosidases 261 699 IPR017853 -
Spst1g01066 1370 CDD Thioesterase_II_repeat1 1033 1143 - -
Spst1g01066 1370 SUPERFAMILY cAMP-binding domain-like 725 832 IPR018490 -
Spst1g01066 1370 MobiDBLite consensus disorder prediction 206 243 - -
Spst1g01066 1370 Pfam Cyclic nucleotide-binding domain 754 831 IPR000595 -
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 617 639 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 508 527 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 559 570 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 435 457 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 342 363 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 577 600 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 299 313 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 320 338 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 542 558 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 ProSitePatterns Beta-amylase active site 1. 346 354 IPR018238 GO:0000272|GO:0016161
Spst1g01066 1370 ProSiteProfiles cAMP/cGMP binding motif profile. 735 805 IPR000595 -
Spst1g01066 1370 Gene3D - 849 1146 IPR042171 -
Spst1g01066 1370 MobiDBLite consensus disorder prediction 57 74 - -
Spst1g01066 1370 FunFam Acyl-CoA thioesterase II 721 844 - -
Spst1g01066 1370 FunFam Acyl-CoA thioesterase II 849 1147 - -
Spst1g01066 1370 MobiDBLite consensus disorder prediction 144 176 - -
Spst1g01066 1370 Pfam Thioesterase-like superfamily 880 1126 - -
Spst1g01066 1370 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 851 960 IPR029069 -
Spst1g01066 1370 MobiDBLite consensus disorder prediction 1 96 - -
Spst1g01066 1370 SMART cnmp_10 735 852 IPR000595 -
Spst1g01066 1370 MobiDBLite consensus disorder prediction 82 96 - -
Spst1g01066 1370 CDD Thioesterase_II_repeat2 866 958 - -
Spst1g01066 1370 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 762 778 IPR018488 -
Spst1g01066 1370 MobiDBLite consensus disorder prediction 207 225 - -
Spst1g01066 1370 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 968 1144 IPR029069 -
Spst1g01066 1370 Gene3D Glycosidases 255 718 - -
Spst1g01066 1370 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 237 696 IPR001554 GO:0000272|GO:0016161
Spst1g01066 1370 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 216 IPR008540 -
Spst1g01066 1370 Gene3D Jelly Rolls 719 837 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01066 Spst-Chr1 12991690 13019512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01066 1 699 Glycoside Hydrolase AT2G45880 65.434 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Spst1g01066 Glyco_hydro_14 9.9e-102 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01066 K01177 - gmx:100805560 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01066 1 12991690 13019512 Spst1g01066 1 12991690 13019512 ECH