Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01062 ATGGATCGCGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGGATACCTGGATCTGGAGCACAACCTGAGTTACATATGTCGCCTAATATTCGATCACTCTCTAATCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTTCCATTGGATCCACATTGCCATTAGAGTCTTCAGCAATTTCGGCTCATGGTGTCAATGTGGGAGCTCCTCCTGGGGCACCTCCAGGGGAACCTGTTAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGAACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGTCATCCTGGAGCCTTGACACAGGGCCAGAAACGGGGCAGAGGGCGCCCACCTGGGACTGGGAAAAAACAGCAACTGGCTTCTCTTGTCGATTTTGGCAGAATATTTGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGTATTTTGTCAGCCAATGGTGCTGTCTCAACTGTCACACTTCGGCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTCACTGATAGTAGTGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGAGTCATTGGTGGTGGAGTAGGTGGAGTTCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCAATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAAGCTCAGAAGTTGCAGAAGTTGCCGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAACCTTTCTCCAACCCCTCCATCCTTGAGTCCTTGGTCGCAATCACGACCATTGGATATGCGTAATTCCCATGTGGACATTGACTTGATGCGTGGGTGA 978 0.4888 MDRGDQMALSGSYYMQQRGIPGSGAQPELHMSPNIRSLSNPNLPFQSSIGGGSIGSTLPLESSAISAHGVNVGAPPGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSSHPGALTQGQKRGRGRPPGTGKKQQLASLVDFGRIFDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSSGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFQWGGSKTKNKKKESSEVAEVAVESDHQGVHNPVALNSISPNQNLSPTPPSLSPWSQSRPLDMRNSHVDIDLMRG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01062 325 MobiDBLite consensus disorder prediction 100 118 - -
Spst1g01062 325 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Spst1g01062 325 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Spst1g01062 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 252 IPR005175 -
Spst1g01062 325 MobiDBLite consensus disorder prediction 68 135 - -
Spst1g01062 325 CDD DUF296 148 251 IPR005175 -
Spst1g01062 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 298 IPR039605 GO:0003680
Spst1g01062 325 MobiDBLite consensus disorder prediction 281 313 - -
Spst1g01062 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 253 - -
Spst1g01062 325 ProSiteProfiles PPC domain profile profile. 133 274 IPR005175 -
Spst1g01062 325 MobiDBLite consensus disorder prediction 1 50 - -
Spst1g01062 325 Gene3D - 145 281 - -
Spst1g01062 325 MobiDBLite consensus disorder prediction 273 325 - -
Spst1g01062 325 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01062 Spst-Chr1 12920596 12925230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01062 1 325 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 45.730 5.26e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01062 - - gmx:100814615 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01062 1 12920596 12925230 Spst1g01062 1 12920596 12925230 ECH