Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01055 GATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGAAAAACAGCAGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTAATATTGGTCCCAACTCGAGAGCTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTCGGAAAACATTTGCAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAGCCAGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCAATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAACAGCTGATTCAATTTCTTCCTGGAACCCGTCAAATTCTGATGTTTTCTGCCACATTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTACGTAAGCCATACGTCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATCACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCTTAAATACTCTATTCTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCTGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTTCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGAGGAATAGACATACAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCAGAAACCTATCTTCACAGGGTTGGTCGTTCGGGGAGGTTTGGACACCTAGGTTTGGCGGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGTACTGAAATAAAACAAATTCCGCCACACATTGATCAAGCAATATATTGCCGGTGA 1149 0.3873 DVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01055 382 Pfam DEAD/DEAH box helicase 33 197 IPR011545 GO:0003676|GO:0005524
Spst1g01055 382 FunFam ATP-dependent RNA helicase DDX6 1 212 - -
Spst1g01055 382 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 155 163 IPR000629 -
Spst1g01055 382 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 219 379 IPR001650 -
Spst1g01055 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 362 IPR027417 -
Spst1g01055 382 SMART ultradead3 27 223 IPR014001 -
Spst1g01055 382 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 209 IPR014001 -
Spst1g01055 382 Pfam Helicase conserved C-terminal domain 234 340 IPR001650 -
Spst1g01055 382 Gene3D - 213 382 IPR027417 -
Spst1g01055 382 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
Spst1g01055 382 CDD SF2_C_DEAD 220 349 - -
Spst1g01055 382 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 381 - -
Spst1g01055 382 Gene3D - 2 212 IPR027417 -
Spst1g01055 382 SMART helicmild6 259 340 IPR001650 -
Spst1g01055 382 FunFam ATP-dependent RNA helicase DDX6 213 382 - -
Spst1g01055 382 CDD DEADc_DDX6 10 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01055 Spst-Chr1 12874093 12877242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01055 10 375 Eukaryotic Initiation Factors Gene Family AT3G19760 38.315 1.26e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01055 K12614 - pvy:116118171 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01055 1 12874093 12877242 Spst1g01055 1 12874093 12877242 ECH