Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01053 ATGGGAAGGACACCATGTTGTGACAAGAAAGGTTTGAAGAAAGGACCTTGGACAGCTGAAGAGGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTATCTGAGACCTGACATCAAGCGTGGTCCCTTTACCCTTGAGGAAGAGAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCTCAGTTACCAGGAAGAACCGACAATGAGATAAAGAACTTATGGAACACCCACCTGAAGAAACGTCTCAAAAGCATGGGACTTGACCCTAGAACCCACGAGCCATTGGCCTCATCACCATCTTACCCCTTCCACAAGGCACATGCATCTGTGTCCACACGCCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCGTCAAGGTTCAGCCACAACACCATCAATCCCTATTCAGATACCAAAACCACTGACTCTGATTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTGTAGTTCATCAAAAAGCTGATGACAACAAAATCACCACTTCTAGCTCCTGTCACAGTCCTCTCTCTGCAGGATCATCTTCCAACAAGTGTGATTCAATTGCAACAAATGCAGATTTAGCTTCCATTGCAGAAGAAAGCATGCCCTCTAACATTGTGAAACAAGAGATGGAGTGGAGGACTCGAGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACAGCTTTGCAGCTCTTGTTAGATTTTCCCATAAACAATGACATGAGTTTCTTAGAAGGAAACTCTTTTATGTGTGCACTTTAG 927 0.452 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLASSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESSRFSHNTINPYSDTKTTDSDYFLRIWNSEVGEAFRNVVVHQKADDNKITTSSSCHSPLSAGSSSNKCDSIATNADLASIAEESMPSNIVKQEMEWRTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCAL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01053 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst1g01053 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Spst1g01053 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst1g01053 308 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Spst1g01053 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst1g01053 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Spst1g01053 308 Gene3D - 69 133 - -
Spst1g01053 308 Gene3D - 11 68 - -
Spst1g01053 308 MobiDBLite consensus disorder prediction 255 278 - -
Spst1g01053 308 CDD SANT 16 62 IPR001005 -
Spst1g01053 308 FunFam Myb transcription factor 11 68 - -
Spst1g01053 308 MobiDBLite consensus disorder prediction 214 234 - -
Spst1g01053 308 FunFam MYB transcription factor 70 117 - -
Spst1g01053 308 CDD SANT 70 113 IPR001005 -
Spst1g01053 308 SMART sant 67 115 IPR001005 -
Spst1g01053 308 SMART sant 13 64 IPR001005 -
Spst1g01053 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Spst1g01053 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01053 Spst-Chr1 12867538 12869928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01053 1 302 MYB Transcription Factor Family AT3G61250 64.706 2.74e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g01053 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01053 K09422 - gmx:100800408 543.888